Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120205.Seq
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0083 - 604175-605776                                             28   7.1  
08_01_0082 - 588269-588434,590800-591653                               28   7.1  
02_01_0166 + 1154695-1156569                                           28   9.4  

>08_01_0083 - 604175-605776
          Length = 533

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 60  TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 173
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 60  TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 173
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259


>02_01_0166 + 1154695-1156569
          Length = 624

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 732 KERKQIRLQTEYLAKLFNNTIND--FKLYTELYE 637
           K R+ + L T  +  LF N +ND  +K+ T LY+
Sbjct: 476 KIRQNVDLSTNLVDTLFRNNLNDRAYKIVTSLYD 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,337,131
Number of Sequences: 37544
Number of extensions: 375952
Number of successful extensions: 916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)