Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120205.Seq
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   4.1  
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)                  29   5.4  
SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)                       29   5.4  
SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31)                     28   7.2  
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 593 WHGQQQSTPSVRSINSYNSVYSLKSFIVLLNSFAKYSVCNRICLRSFTKSLTLGHGKR 766
           + G+Q     +  + S N  + L    +L +   KY+  +  CLR F    TL  GKR
Sbjct: 49  FRGKQMWLTQLLELTSLNGYFELVLVFILSSCIHKYTSASSFCLR-FALHFTLCIGKR 105


>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 299 QTRFCNSRKPNEGRREIASFLRYCRMCGMSGC 204
           +TR C + KP+ G ++     +  R CG + C
Sbjct: 404 RTRTCTNPKPSSGGKDCVGIAKQTRECGKAPC 435


>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
          Length = 798

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -1

Query: 436 EKHTNTGCTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHDFVTVESQTRAG 257
           E+H      RKK  K  Q+   K+    +SN   + + SGL+ K C  +  T   Q  + 
Sbjct: 689 EEHLQLEEERKKMWKKEQV-EQKLRARLDSNSKVIIQASGLAYKDCMPELFTKIKQRGST 747

Query: 256 EKSLRS 239
              L S
Sbjct: 748 SSDLES 753


>SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 446

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 299 QTRFCNSRKPNEGRREIASFLRYCRMCGMSGC 204
           +TR C + KP+ G ++     +  R CG + C
Sbjct: 319 RTRTCTNPKPSSGGKDCVGIAKQTRECGKAPC 350


>SB_20196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 415 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSC 299
           C RKKK ++ + L ++V  L+N NK  + EL  L    C
Sbjct: 256 CRRKKK-EYVKCLENRVAVLENQNKTLIEELKALKDLYC 293


>SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31)
          Length = 571

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 497 RFLFNLGGFMSNSLQFRVFT*FLVLN--RLLCNSWHGQQQSTPSVRSINSYNSVYSLKSF 670
           RF+ N   F+ NS +F ++    V+N  R + NS H   +ST  V  INS   V +   F
Sbjct: 313 RFVINSTRFVINSTRFVMYANHFVINATRFVINSTHVVIKSTHVV--INSTRFVINSTRF 370

Query: 671 IV 676
           ++
Sbjct: 371 VI 372


>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 299 QTRFCNSRKPNEGRREIASFLRYCRMCGMSGC 204
           +TR C + KP+ G R+     +  R CG++ C
Sbjct: 111 RTRTCTNPKPSNGGRDCWGDSKKTRKCGIAPC 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,917,280
Number of Sequences: 59808
Number of extensions: 457188
Number of successful extensions: 1291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)