Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120205.Seq
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p... 29 2.7
AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical ... 29 3.6
AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical ... 29 3.6
AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical ... 29 3.6
AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical ... 29 3.6
AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical ... 29 3.6
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ... 29 3.6
AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic AMP-re... 29 3.6
AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic AMP-re... 29 3.6
Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical pr... 28 8.4
U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter... 28 8.4
Z77668-3|CAI46576.1| 284|Caenorhabditis elegans Hypothetical pr... 24 9.8
Z77655-9|CAI46567.1| 284|Caenorhabditis elegans Hypothetical pr... 24 9.8
>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
protein B0222.9 protein.
Length = 1217
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 181 FGGLSMNGSWIFCMCEVYPGGVCNPSF 101
FGG N SWI CMC + + P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734
>AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical
protein Y41C4A.4e protein.
Length = 306
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 415 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 290
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 262 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 302
>AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical
protein Y41C4A.4d protein.
Length = 331
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 415 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 290
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 287 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 327
>AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical
protein Y41C4A.4c protein.
Length = 314
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 415 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 290
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 270 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 310
>AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical
protein Y41C4A.4b protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 415 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 290
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 283 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 323
>AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical
protein Y41C4A.4a protein.
Length = 325
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 415 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 290
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 281 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 321
>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
protein F15E6.6 protein.
Length = 1228
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 181 FGGLSMNGSWIFCMCEVYPGGVCNPSFCV 95
FGG N SWI C+C V + P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768
>AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 gamma 2 protein.
Length = 325
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 415 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 290
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 281 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 321
>AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 beta protein.
Length = 306
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 415 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 290
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 262 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 302
>Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical
protein T07D10.3 protein.
Length = 377
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 663 FKLYTELYEFIERTEGVDCCCPCQLLHKSLFNTRNYVKTLNCKLFDIK 520
F Y E E ER G+ C CQ + +++V + NC+ FD K
Sbjct: 224 FLRYQEKQE--ERAYGLYVCTTCQRRFRDNKGFQSHVASQNCEFFDRK 269
>U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 31, isoform a protein.
Length = 592
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 261 QARNRFVPSLLSDVWNVWLLIVACSVTSAAC 169
+AR R VP + WN W ACS T AC
Sbjct: 481 EARARAVPE--AGNWNSWSPWTACSATCGAC 509
>Z77668-3|CAI46576.1| 284|Caenorhabditis elegans Hypothetical
protein R11G10.3 protein.
Length = 284
Score = 23.8 bits (49), Expect(2) = 9.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 363 ITLSFNICLCLIFFLRVH 416
+ LSF ICLCL+ V+
Sbjct: 159 VALSFVICLCLVVLFLVN 176
Score = 22.2 bits (45), Expect(2) = 9.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 195 LLLTARHSTHPTVAKERSDFSPALVWLSTVTKSC 296
+L++A + T P V + A V++S KSC
Sbjct: 92 ILISANYYTQPIVILALLERLAATVFVSNYEKSC 125
>Z77655-9|CAI46567.1| 284|Caenorhabditis elegans Hypothetical
protein R11G10.3 protein.
Length = 284
Score = 23.8 bits (49), Expect(2) = 9.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 363 ITLSFNICLCLIFFLRVH 416
+ LSF ICLCL+ V+
Sbjct: 159 VALSFVICLCLVVLFLVN 176
Score = 22.2 bits (45), Expect(2) = 9.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 195 LLLTARHSTHPTVAKERSDFSPALVWLSTVTKSC 296
+L++A + T P V + A V++S KSC
Sbjct: 92 ILISANYYTQPIVILALLERLAATVFVSNYEKSC 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,152,884
Number of Sequences: 27780
Number of extensions: 361731
Number of successful extensions: 1059
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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