Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120205.Seq
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   4.1  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
 Frame = -2

Query: 726 RKQIRLQTEYLAKLFNNTINDFKLYTELYE--FIERTEGVDCCCP---CQLLHKSLFNTR 562
           RK+     E   K + N  N ++ Y E ++    +RTE      P     L ++++ N  
Sbjct: 36  RKRYSRSREREQKSYKNE-NSYRKYRETWKERSRDRTERERSREPKIISSLSNRTIHNNN 94

Query: 561 NYVKTLNCKLFDIKPPKLKRNLSTIFFTSIP*ITKVYC 448
           NY    N   ++    KL  N++ I    +P    +YC
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINYIEQIPVPVPVPIYC 132


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -1

Query: 172 LSMNGSW--IFCMCEVYPGGVCNPSFCVC 92
           LS+N S   I C+ +   GG C    C+C
Sbjct: 74  LSINHSACAIRCLAQRRKGGSCRNGVCIC 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,733
Number of Sequences: 438
Number of extensions: 4306
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)