Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120205.Seq
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29280.1 68417.m04186 expressed protein ; expression supporte...    29   3.4  
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein...    29   3.4  
At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein c...    29   4.5  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    29   4.5  
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta...    28   7.8  

>At4g29280.1 68417.m04186 expressed protein ; expression supported
           by MPSS
          Length = 77

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 145 CMCEVYPGGVCNPSFCVCV*YRLKNGAG 62
           C   ++PG  C+PS CV   Y   NG G
Sbjct: 31  CTIIIHPGSPCDPSDCVQYCYAEYNGVG 58


>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 604

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 379 LNDKVIYLQNSNKNKLFELSGLSLKSCRHDFVTVESQTRA 260
           L+   ++L+ S    LF    LSLK  +HDFV V++ T++
Sbjct: 16  LHQAPLFLKTSQS--LFPRPSLSLKPMKHDFVCVKATTKS 53


>At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein
           contains Pfam profile PF05131: Pep3/Vps18/deep orange
           family; similar to Vacuolar protein sorting 18 (hVPS18)
           (SP:Q9P253) {Homo sapiens}
          Length = 994

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 756 CPSVSDLVKERKQIRLQTEYLAKLFNNTINDFKLYTELYEFIERTEGVDCC 604
           C S+ D  K+ +Q++ +     +  +N  ND    T+ Y  I+R E    C
Sbjct: 795 CSSLEDYNKQIEQLKEEMNDATRGADNIRNDISALTQRYAVIDRDEECGVC 845


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 232 TVGCVECLAVNSSVFCNFGGLSMNGSWIFC 143
           T+ C  C  + ++V C+ GG S NGS ++C
Sbjct: 784 TITC-SCGRITATVPCDAGGRSANGSNVYC 812


>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 738

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 59  HAGAVLQPVSHADAEARVTDAARVDLAHTEDPGAVH*QAAEVTEHATINS 208
           HAG  L PV+ A+++AR   A ++D    E   A     A+ T+   + S
Sbjct: 229 HAGEYLDPVAVAESKARRRRAKKMDSIEDEKAKASEGGKAKNTQQTDVGS 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,773,940
Number of Sequences: 28952
Number of extensions: 315114
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)