Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120204.Seq
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    29   0.62 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   4.4  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   5.8  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   7.6  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +3

Query: 159 DMLQTINTTASQTA-ASLLIND---ITPNKTESLKICLLNLSE 275
           D +Q +NTT+S +A AS  I       PN+ E LK+C L+L++
Sbjct: 666 DWVQPVNTTSSVSAFASPRIKPKLLFQPNQDEKLKLCKLDLAK 708


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 455 KQIAVKNRRAYAIGDMAPIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNTILNNNAAIA 634
           K + V + R Y+I D   +   + +   N+QL  D     ++ V+++   T LNN   I 
Sbjct: 251 KDVRVFDWRPYSIADRNAVLSRMSNAFDNMQLPPDAPERSLL-VSKQKNITKLNNEKRIP 309

Query: 635 SQ 640
            Q
Sbjct: 310 PQ 311


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 784 RNAARKLIHHYSLNSTS 834
           R   RKL+HH SLN+ S
Sbjct: 65  RKPTRKLVHHISLNNVS 81


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 147 MAAVDMLQTINTTASQTAASLLINDITPNKTESLKI 254
           +AA      +  +  Q  A  LIND+ PNK   L I
Sbjct: 447 LAAYSKEAQLPGSIKQNIAQYLINDVVPNKDGDLSI 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,063
Number of Sequences: 5004
Number of extensions: 58556
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)