Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120204.Seq
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23648-10|AAK95878.2|  368|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    28   9.5  

>L23648-10|AAK95878.2|  368|Caenorhabditis elegans Hypothetical
           protein F44B9.8 protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 717 CLREPTPSRLRSLPKTDQHAPIQKCCSQTNPSLF 818
           C+ +PTP  ++ + KT  + P +KC +     LF
Sbjct: 256 CIGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLF 289


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 463 NLFISKYNAIA-LIVTDDAHLLCNYHLDRVVVNAPQKV*HVDRFDSIQLNFGLVGL 299
           +LF++ + +    +V + A  LC  H  R V  +P K     +F   +  FG VGL
Sbjct: 309 SLFVAAHTSAGKTVVAEYAIALCQAHKTRAVYTSPIKALSNQKFRDFKQIFGDVGL 364


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
           protein F54D1.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = -3

Query: 393 ITWIVLS*TLPKKS----NTLTVSILFNLILVSLACIGSNRLRAPTD*VDKFLNFQFYW 229
           + +++LS  L K++      L +++ +N + ++ +C+ SN  +  +D ++K +N   YW
Sbjct: 453 VDFVILSTVLQKQNLPPDEQLALTLSWNRVDLAKSCLFSNGRKWSSDVLEKAMNDALYW 511


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = -3

Query: 393 ITWIVLS*TLPKKS----NTLTVSILFNLILVSLACIGSNRLRAPTD*VDKFLNFQFYW 229
           + +++LS  L K++      L +++ +N + ++ +C+ SN  +  +D ++K +N   YW
Sbjct: 169 VDFVILSTVLQKQNLPPDEQLALTLSWNRVDLAKSCLFSNGRKWSSDVLEKAMNDALYW 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,687,437
Number of Sequences: 27780
Number of extensions: 356828
Number of successful extensions: 1067
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)