Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120204.Seq
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.66 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 68  GHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHGLS 193
           GHWQ        PP+QT   P     +G RR     +++ +S
Sbjct: 383 GHWQMSCVACSPPPRQT---PPSRKESGRRRRRRTPRYNSVS 421


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 174 INTTASQTAASLLINDITPNKTESLKI 254
           IN   SQT   LLI++I P+ + +L +
Sbjct: 271 INILLSQTMFFLLISEIIPSTSLALPL 297


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 213 INDITPNKTESLKICLLNLSERAICW 290
           ++DI    T    + LLNLSE  I W
Sbjct: 538 LSDINGVFTSIASLLLLNLSENHIEW 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,776
Number of Sequences: 438
Number of extensions: 4091
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)