Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120204.Seq
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30570.1 68414.m03740 protein kinase family protein contains ...    31   1.3  
At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma m...    30   1.7  
At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma mem...    29   2.9  
At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb...    29   5.1  
At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb...    29   5.1  
At1g16400.1 68414.m01961 cytochrome P450 family protein similar ...    29   5.1  
At2g47520.1 68415.m05931 AP2 domain-containing transcription fac...    28   8.9  

>At1g30570.1 68414.m03740 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 849

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 440 VVFGNKQIAVKNRR--AYAIGDMAPIFPLLCDEHQNVQLNTDVL 565
           +V  N  + VKN     YA+ D +P+ PLL  E   +  NT+VL
Sbjct: 257 MVIENAGVEVKNSSNITYALADDSPVAPLLVYETARMMSNTEVL 300


>At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma
           membrane-type / Ca2+-ATPase, isoform 4 (ACA4) identical
           to SP|O22218 Calcium-transporting ATPase 4, plasma
           membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4)
           {Arabidopsis thaliana}
          Length = 1030

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 184 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 53
           ++LMVC + +  + V  EGF  G       +  +LL V +++IS
Sbjct: 172 IILMVCAVVSIGVGVATEGFPRGMYDGTGILLSILLVVMVTAIS 215


>At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA11)
           identical to SP|Q9M2L4|ACAB_ARATH Potential
           calcium-transporting ATPase 11, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis
           thaliana}; strong similarity to calmodulin-stimulated
           calcium-ATPase [Brassica oleracea] GI:1805654
          Length = 1025

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 184 VVLMVCNMSTAAICVCAEGFAGGXXXXXXRVCDMLLPVSISSIS 53
           ++LMVC + +  + V  EGF  G       +  ++L V +++IS
Sbjct: 172 IILMVCAVVSIGVGVATEGFPKGMYDGTGILLSIILVVMVTAIS 215


>At1g16410.2 68414.m01962 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 423

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/78 (25%), Positives = 38/78 (48%)
 Frame = +2

Query: 242 KFKNLSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVIVTE*VCVVG 421
           K K + T  + +   L+ ++A  T      IE  N++ ++ S+Y  +  V V E   V G
Sbjct: 142 KMKRVITTEIMSVKTLKMLEAART------IEADNLIAYVHSMYQRSETVDVRELSRVYG 195

Query: 422 HDERYRVVFGNKQIAVKN 475
           +    R++FG + +  +N
Sbjct: 196 YAVTMRMLFGRRHVTKEN 213


>At1g16410.1 68414.m01963 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 538

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/78 (25%), Positives = 38/78 (48%)
 Frame = +2

Query: 242 KFKNLSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVIVTE*VCVVG 421
           K K + T  + +   L+ ++A  T      IE  N++ ++ S+Y  +  V V E   V G
Sbjct: 142 KMKRVITTEIMSVKTLKMLEAART------IEADNLIAYVHSMYQRSETVDVRELSRVYG 195

Query: 422 HDERYRVVFGNKQIAVKN 475
           +    R++FG + +  +N
Sbjct: 196 YAVTMRMLFGRRHVTKEN 213


>At1g16400.1 68414.m01961 cytochrome P450 family protein similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family; identical
           to cytochrome P450 CYP79F2 (CYP79F2) GI:10946207
          Length = 537

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +2

Query: 242 KFKNLSTQSVGARNLLEPMQANETKIKLNRIETVNVLDFLGSVYDNTIQVIVTE*VCVVG 421
           K K + T  + +   L  ++A  T      IE  N++ ++ S+Y  +  V V E   V G
Sbjct: 141 KMKKVITTEIMSVKTLNMLEAART------IEADNLIAYIHSMYQRSETVDVRELSRVYG 194

Query: 422 HDERYRVVFGNKQIAVKN 475
           +    R++FG + +  +N
Sbjct: 195 YAVTMRMLFGRRHVTKEN 212


>At2g47520.1 68415.m05931 AP2 domain-containing transcription
           factor, putative
          Length = 171

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 742 RDGVGSRKQIYYGTRRRMGGTWRCD 668
           RDG   RK +Y G R+R  G W  +
Sbjct: 40  RDGKRERKNLYRGIRQRPWGKWAAE 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,288,730
Number of Sequences: 28952
Number of extensions: 316149
Number of successful extensions: 785
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)