Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120203.Seq
         (842 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.25 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   3.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 569 LFTFFVFYKYCSLIQLYCIAF 507
           LF   ++Y YC+LI L CI +
Sbjct: 280 LFLLCIYYFYCALIILLCIYY 300



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 388 KCYLMRRYIFFFILRI 341
           KCY +RR  +F+ + I
Sbjct: 49  KCYNLRRIYYFYCVSI 64


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 649 DSILYFF*FYTILLS 605
           D I YFF F+TIL S
Sbjct: 63  DFIAYFFNFWTILFS 77


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 398 RQCYKSILKIDYSM 439
           +QC K+  ++DYSM
Sbjct: 795 KQCCKNCARVDYSM 808



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 62  IYIDNGCWLCFQISL 18
           +Y+DN C + + +SL
Sbjct: 551 LYVDNDCCIRYDVSL 565


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,534
Number of Sequences: 336
Number of extensions: 3280
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23244256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)