Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120203.Seq
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    29   1.1  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   2.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   2.5  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   5.8  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   7.7  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 399 LTLRNVI**EDTYFFSYLESILILNKNYEYKEVLVYFNI 283
           L ++N++    TYFF+ L   +ILN  YE  +   + NI
Sbjct: 85  LIIQNMVSFHSTYFFNVLLPPIILNSGYELHQSNFFRNI 123


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 83  NVSDCRIIYIDNGCWLCFQI 24
           NVSDC++ +  NG +LC ++
Sbjct: 405 NVSDCKLYWQSNGDYLCVKV 424


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = +2

Query: 188 YSNVHNTFH---IYKWKNFI*YLYSVE 259
           Y+NV+N+FH   +++W  F   L++++
Sbjct: 528 YTNVYNSFHDRRVWRWSTFFSILFAID 554


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 794 CIILLKNLVFQYYYCK 841
           C+ILLK L  + Y+CK
Sbjct: 398 CVILLKRLTAEKYFCK 413


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 748 VFTIHKTRLNTFQIVLHNFVKKFGIPVLLL 837
           +F +H+ +   FQI+++   K F IP+ L+
Sbjct: 264 IFDVHRAK--EFQIIIYEKKKDFDIPIALI 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,131
Number of Sequences: 5004
Number of extensions: 52069
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)