Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120203.Seq
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0092 + 12265446-12265809,12266147-12266743,12266792-122668...    29   4.6  

>08_02_0092 +
           12265446-12265809,12266147-12266743,12266792-12266861,
           12267325-12267427
          Length = 377

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 104 SIITVTHNVSDCRIIYIDNGCWLCFQI 24
           SI  ++HN++   +I+ID GC++ + I
Sbjct: 322 SIYLISHNITATFVIWIDKGCFVSWHI 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,193,092
Number of Sequences: 37544
Number of extensions: 225126
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)