Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120203.Seq
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   1.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.2  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 2   VTFPQEARFGSITNSRYLY 58
           VTFPQ  RF S+   +Y Y
Sbjct: 307 VTFPQRNRFSSLPYYKYKY 325


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 2   VTFPQEARFGSITNSRYLY 58
           VTFPQ  RF S+   +Y Y
Sbjct: 307 VTFPQRNRFSSLPYYKYKY 325


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +3

Query: 126 VYSMLIY*ITRDDDEFIQNYHIVMFIIHFIFTNGKTSFSTYTLSKNKYQMNT 281
           +YS+    ITR D +FIQ   +     +F F +     + + L   K    T
Sbjct: 141 IYSLYTAVITRPDTKFIQLPPLYEMCPYFFFNSEVLQKANHALIFGKLDTKT 192


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +3

Query: 126 VYSMLIY*ITRDDDEFIQNYHIVMFIIHFIFTNGKTSFSTYTLSKNKYQMNT 281
           +YS+    ITR D +FIQ   +     +F F +     + + L   K    T
Sbjct: 141 IYSLYTAVITRPDTKFIQLPPLYEMCPYFFFNSEVLQKANHALIFGKLDTKT 192


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -2

Query: 235 EVFPFVNMKCIMNITIW 185
           E FPF    CIM    W
Sbjct: 163 EYFPFDEQSCIMKFGSW 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,498
Number of Sequences: 438
Number of extensions: 3515
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)