Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120202.Seq
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    28   1.7  
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ...    26   5.0  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   5.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.8  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   8.8  

>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
 Frame = +2

Query: 347 KILIPYSSSMAFTSLVDTLANTI--HRDAITAPLVETAISNFRHKLQLYPYQDINDNKSQ 520
           K+ I  S  M +  L +++ +T+   RD   AP  +  +   R ++QL   +D  D KS+
Sbjct: 121 KVDIIVSEWMGYFLLYESMLDTVLVARDRYLAP--DGLLFPDRAQIQLAAIEDA-DYKSE 177

Query: 521 LVPGFCA*HGFHANTIHRDAITAPLVET 604
            +  +   +GF  + I +D    PLV+T
Sbjct: 178 KIGFWDDVYGFDFSPIKKDVWKEPLVDT 205


>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 476 LQLYPYQ-DINDNKSQLVPGFCA*HGFHANTIHRDA 580
           L + PY  ++ND K  + PGFC    F+  T  RDA
Sbjct: 220 LLIVPYTLEVNDMKYAVAPGFCNSDDFY--TYARDA 253


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
 Frame = +2

Query: 284 PSAISVTGFNFTHIR*IPSSCKILIP-------YSSSMAFTSLVDTLANTIHRDAITAPL 442
           PS +S +  NF     IP S   L+P       Y+ +     L      T+ RD   APL
Sbjct: 349 PSGLSASNSNFASSSFIPQSVPQLLPIYYQTIFYNGNYYLQQLPSASPPTMFRDHSFAPL 408

Query: 443 VETAI 457
           V  +I
Sbjct: 409 VSPSI 413


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 446  ETAISNFRHKLQLYPYQDINDNKSQLV 526
            ET + N  H+L LY  QD+  +K + V
Sbjct: 2118 ETLVDNLYHQLTLYQLQDLICSKCKTV 2144


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 225 TKLVKAMLSAEARDKLTLLVVY 160
           TKL K+MLS+E R K  L  +Y
Sbjct: 164 TKLTKSMLSSEKRSKNHLSKIY 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,875
Number of Sequences: 5004
Number of extensions: 66142
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)