Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120202.Seq
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014...    37   0.015
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991     30   1.7  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    29   5.3  
08_02_0335 - 15880426-15880509,15881344-15881444,15882310-158823...    28   7.0  
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665...    28   7.0  
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002...    28   7.0  
08_02_0795 + 21273453-21273752                                         28   9.2  
02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989           28   9.2  

>12_02_1091 - 26001129-26001181,26001292-26001325,26001339-26001437,
            26002327-26002369,26002389-26002494,26002776-26002818,
            26003526-26003579,26003831-26003911,26003997-26004119,
            26004197-26004846,26004928-26005554,26005633-26005870,
            26006082-26006258,26006373-26006723,26006824-26007111,
            26008340-26008462,26008551-26009007,26009115-26009263,
            26009466-26009489
          Length = 1239

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 24/68 (35%), Positives = 28/68 (41%)
 Frame = -1

Query: 638  KVEACDGNC*WRFPLGEPLWRLGGWCWRESHAKRRSQGQADFCCRLYPDMGKVEACDGNC 459
            KV    GNC W  P    + R     W E H  R   G  D  C  Y   GK +  DGNC
Sbjct: 1124 KVYKSGGNCNWVLPQYVCVMRACRLYWAEVHC-RNVLGFTDSSCYHYAPKGKQKLKDGNC 1182

Query: 458  *WRFPLGE 435
              R+ + E
Sbjct: 1183 VARYGIVE 1190


>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
          Length = 276

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/72 (29%), Positives = 25/72 (34%)
 Frame = +1

Query: 43  SRQHHPPRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDVNNQQSQLVPGFCA*HGFHQF 222
           S  H   +RH   P G+ HQ      S     G FQ+      Q +  P           
Sbjct: 72  SSGHRESQRHHQQPPGS-HQHHRRSGSVASDPGDFQSKFAPPPQFRPSPSPSQYDHHSSD 130

Query: 223 SRHSRQHHPPSA 258
            RH   HHPP A
Sbjct: 131 HRHGHGHHPPHA 142


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 25/69 (36%), Positives = 31/69 (44%)
 Frame = +1

Query: 436 SPSGNRHQQFPSQASTLPISGYKRQQKSACPWLLRLAWLSRQHHPPRRHNGSPSGNRHQQ 615
           +PS  RH   PS+    PI   +R+  S  P  LR    S +H  PRR  GSP   R   
Sbjct: 294 APSPIRHGGTPSRRPGSPI---RRRSPSPPPRRLR----SPRHLSPRRDRGSPI-RRRSP 345

Query: 616 FPSQASTLP 642
            P +  T P
Sbjct: 346 LPRRRLTPP 354


>08_02_0335 -
           15880426-15880509,15881344-15881444,15882310-15882396,
           15882495-15882510
          Length = 95

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 58  PPRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDVNNQQSQLVPG-FCA*HGFHQF-SRH 231
           PP+  GGS +  RH     + + LP S  F     NNQQ     G     +GF  F ++H
Sbjct: 12  PPQ--GGSGASKRHADIHHEVTNLPGSKGFTPSRNNNQQPYNGQGAHSLTYGFKTFATKH 69

Query: 232 SRQH 243
            R++
Sbjct: 70  PRKY 73


>07_03_1780 -
           29465873-29466130,29466236-29466335,29466473-29466559,
           29466682-29467000,29467097-29468567
          Length = 744

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 566 WCWRESHAKRRSQGQADFCCRLYPDMGKVEACD 468
           + WR +  KR+ +   D+ C +  D G++  CD
Sbjct: 395 YVWRGARVKRKWEEDDDYVCSVCHDCGELLMCD 427


>03_06_0523 +
           34499533-34499705,34499808-34499917,34500037-34500224,
           34500984-34501451
          Length = 312

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 556 RQHHPPRRHNGSPSGNRHQQFPSQA 630
           R H PP  H   PS    Q+FP +A
Sbjct: 178 RHHEPPMSHKKFPSSAGEQRFPDRA 202


>08_02_0795 + 21273453-21273752
          Length = 99

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 284 AVSTRGAVMALGGWCWREC 228
           A  T  A  A GGW WR+C
Sbjct: 67  ACDTAAAAAAAGGWEWRDC 85


>02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989
          Length = 246

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 64  RRHGGSPSGNRHQQFPSQAS 123
           RRHGGS SGNR    P  A+
Sbjct: 42  RRHGGSGSGNRGTTLPRAAT 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,277,270
Number of Sequences: 37544
Number of extensions: 509480
Number of successful extensions: 1459
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)