Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120202.Seq
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)               28   9.4  
SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)                 28   9.4  

>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +1

Query: 61   PRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDVNNQQSQLVPGF 195
            PR  G   SG+      S    +P SGK Q  D  N+Q     GF
Sbjct: 1198 PRGEGEEKSGSSGSSMESSPQGMPASGKTQITDNPNKQPGFPGGF 1242


>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
          Length = 473

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
 Frame = +1

Query: 43  SRQHH------PPRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDVNNQQSQLVPGFCA* 204
           +R HH      PP   G + +  RH      A + P +G   A   ++ +    P     
Sbjct: 333 TRHHHCRHPAPPPPTPGTTTADTRHHHRRHPAPSPPTTGTITADTRHHHRRHPAPSPPTP 392

Query: 205 HGFHQFSRHSRQHHPPSAITAPLVETAISNFRHR 306
                 +RH  + HP  +   P   TA +   HR
Sbjct: 393 GTITADTRHHHRRHPAPSPLTPGTITADTRHHHR 426


>SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)
          Length = 276

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 356 IPYSSSMAFTSLVDTLANTI 415
           I Y++S+ FTSL+ T+ANT+
Sbjct: 7   ISYTASVLFTSLLSTVANTL 26


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,125,323
Number of Sequences: 59808
Number of extensions: 518409
Number of successful extensions: 1896
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1882
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)