Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120202.Seq
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.4  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   7.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +1

Query: 76  GSPSGNRHQQFPSQASTLPISGKFQAHDVNNQQSQLVP----GFCA*HGFHQFSRHSRQH 243
           G P G    Q PSQ    P SG  Q   +  QQ  L P     F   H  +   +  +QH
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQL-LQQHILSPTQLQSFMQQHSLY-LQQQQQQH 106

Query: 244 HPPSA 258
           H  S+
Sbjct: 107 HQDSS 111



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 433 GSPSGNRHQQFPSQASTLPISGYKRQQK 516
           G P G    Q PSQ    P SG  + Q+
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQ 76



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 586 GSPSGNRHQQFPSQASTLPISGKFQAHDINNQ 681
           G P G    Q PSQ    P SG  Q   +  Q
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQLLQQ 80


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 252 ERHNG-SPSGNRHQQFPSQASTLP 320
           ++HN  SP+G+  Q   S AST P
Sbjct: 57  QQHNSPSPTGSSPQHSGSSASTSP 80



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 574 RRHNG-SPSGNRHQQFPSQASTLP 642
           ++HN  SP+G+  Q   S AST P
Sbjct: 57  QQHNSPSPTGSSPQHSGSSASTSP 80


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 697 GQADFVGCLCHELGIYLIWVK 635
           G  + VGC+C +     +W K
Sbjct: 72  GHCEKVGCICRKTSFKDLWDK 92


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 34  AWLSRQHHPPRRHGGSPSGNRHQQFPSQASTLP 132
           ++ +  + P  R+GG    ++HQQ    A  +P
Sbjct: 3   SYFANSYIPDLRNGGVEHPHQHQQHYGAAVQVP 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,693
Number of Sequences: 438
Number of extensions: 4656
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)