Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120202.Seq
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56880.1 68416.m06327 VQ motif-containing protein contains PF...    30   1.9  
At4g03660.1 68417.m00501 hypothetical protein similar to A. thal...    29   2.5  
At1g67500.1 68414.m07688 DNA polymerase family B protein similar...    29   2.5  
At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    29   3.3  
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma...    29   4.4  
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ...    29   4.4  
At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1 GI...    28   7.7  

>At3g56880.1 68416.m06327 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 245

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 475 ASTLPISGYKRQQKSACPWLLRLAWLSRQHHPPRRHN-GSPSGNRHQQFPSQASTLPISG 651
           AS LP S     + SA P L   ++LS  H      + G+P+G+ H Q  +  +T  + G
Sbjct: 164 ASRLPPSCGNLDRSSAVPTLDTSSFLSNHHQENIITDLGAPTGSFHHQSSAGTTTANVGG 223

Query: 652 KFQAHDINNQQSQLVLAS 705
              A ++++  S   L S
Sbjct: 224 GSSAVELDSYPSFPTLES 241


>At4g03660.1 68417.m00501 hypothetical protein similar to A.
           thaliana hypothetical protein T6P5.8, GenBank accession
           number AC005970
          Length = 100

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 19  WLLRLAWLSRQHHPPRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDVNNQQSQLVPGF 195
           W + + +LS  +HPP+ HG   +   H +  S    L I    +   V  Q S+L+  F
Sbjct: 16  WKINVKFLSICNHPPKSHGEITTMILHDEKTSSIRVLRIGNMSRMQGVWCQISRLLRNF 74


>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
           SP|Q61493 DNA polymerase zeta catalytic subunit (EC
           2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
           DNA polymerase family B
          Length = 1890

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 589 SPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVLASALSMAFTNLVDTL 744
           S S +RHQ    + S   + G   + DI NQQ ++  + + + + TN+V +L
Sbjct: 261 SQSQHRHQHHYRRQSLCELEGDATSSDILNQQFKMYNSLSQAQSDTNMVQSL 312


>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1787

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 28/97 (28%), Positives = 40/97 (41%)
 Frame = +1

Query: 46  RQHHPPRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDVNNQQSQLVPGFCA*HGFHQFS 225
           R   PP   G S +  R Q FPS ++    S   Q+    N  +         H  + F 
Sbjct: 2   RNSFPPSDGGRSTTDRRQQSFPSSSTNRYNSRSAQSSPPLNHCTTWNQQHSQYHNTN-FP 60

Query: 226 RHSRQHHPPSAITAPLVETAISNFRHRLQLYPYQVNS 336
            + R+   PS+  +P V  A  NF  +L L+P   NS
Sbjct: 61  PNYRRDRAPSSGFSPPVTRARPNFIVQL-LHPAAANS 96


>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
           domain-containing protein similar to SEX1 (starch
           excess) [Arabidopsis thaliana] GI:12044358; contains
           Pfam profile PF00686: Starch binding domain
          Length = 1191

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 417 WMVLARVSTKLVKAMLEE*GIKILHELGIYLIWVKLKPVTEIADGGFH*GSRY 259
           W  L  V   +V ++  E  +K L    IYL W+    +    DGG H  +R+
Sbjct: 263 WRKLEMVREVIVGSVEREERLKALIYSAIYLKWINTGQIPCFEDGGHHRPNRH 315


>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
           SP|Q9S5A3 Chaperone protein dnaJ {Listeria
           monocytogenes}; contains Pfam profiles PF00226 DnaJ
           domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
           central domain (4 repeats)
          Length = 442

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 451 RHQQFPSQASTLPISGYKRQQKSACPWLLRLAWLSRQHHPPRR 579
           RHQ   SQ + L  S        + P+L  +  +SR  HPPRR
Sbjct: 34  RHQNSSSQVNCLGASKSSMFSHGSLPFL-SMTGMSRNMHPPRR 75


>At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1
           GI:5566292 from [Drosophila melanogaster]; contains
           prosite evidence: PS00383: Tyrosine specific protein
           phosphatases active site
          Length = 632

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 458 SNFRHKLQLYPYQDINDNKSQLVPGFC 538
           S F  K+  +P+ D N    QL+P FC
Sbjct: 262 SRFEGKVASFPFDDHNCPPIQLIPSFC 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,017,645
Number of Sequences: 28952
Number of extensions: 380426
Number of successful extensions: 1048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)