Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120201.Seq
         (858 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7; Endoptery...    43   0.011
UniRef50_Q2J304 Cluster: Glycoside hydrolase, family 4 precursor...    35   2.3  

>UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7;
           Endopterygota|Rep: Nucleoplasmin isoform 2 - Bombyx mori
           (Silk moth)
          Length = 187

 Score = 42.7 bits (96), Expect = 0.011
 Identities = 23/39 (58%), Positives = 23/39 (58%)
 Frame = -3

Query: 760 DDSQFKEDENKRKGAGKRXXXXXXXXXXXXXXXXKAKMS 644
           DDSQFKEDENKRKGAGKR                KAKMS
Sbjct: 133 DDSQFKEDENKRKGAGKRKPNEDEDNEEGEPKGKKAKMS 171


>UniRef50_Q2J304 Cluster: Glycoside hydrolase, family 4 precursor;
           n=6; Alphaproteobacteria|Rep: Glycoside hydrolase,
           family 4 precursor - Rhodopseudomonas palustris (strain
           HaA2)
          Length = 426

 Score = 35.1 bits (77), Expect = 2.3
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +1

Query: 487 VITSWVVDP-RLHNLDIIIPKMATVR--LAQNGSPGGLFISWHSSWAMQLCLWHYSTFSL 657
           VI +  +D  RL  +D  +PK   +R  L +NG PGGLF +  +   + L          
Sbjct: 82  VINATAIDRNRLWKMDFEVPKKHGIRHPLGENGGPGGLFFTLRT---LPLVFDFIRDIEE 138

Query: 658 FCPWVHLLHYLHPHS 702
            CP    L+Y +P S
Sbjct: 139 LCPEALFLNYSNPES 153


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,803,620
Number of Sequences: 1657284
Number of extensions: 11946486
Number of successful extensions: 23781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23661
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)