Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120201.Seq
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   2.0  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    27   3.4  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    26   6.0  

>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 756 ILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKR 652
           +L+ RK R+KE+ +    +   K  KK   R KK+
Sbjct: 132 LLAERKQRLKEQREKKEQKKEQKKEKKTERRKKKK 166


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 183 QGTL*DSHFVSNCCWSTCN*IC 118
           QG   +   V+NCCW+  N +C
Sbjct: 458 QGLTDNPRIVANCCWAFMNLVC 479


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 634 WHYSTFSLFCPWVHLLHYLHPHSACASLLLFFYSHLP 744
           W +   S+       L YLHP S  A LLL F + +P
Sbjct: 37  WRHPVKSMCLGLTITLLYLHPVSFSAILLLVFLTMMP 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,943
Number of Sequences: 5004
Number of extensions: 51427
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)