Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120201.Seq
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              32   0.69 
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   31   1.6  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   29   3.7  
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            29   6.4  
SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  

>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -1

Query: 756  ILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQ 589
            +L  ++ R KEK++        K  +K   RAKK K R++ + KLH      R ++
Sbjct: 942  LLIEKEKREKEKQKERLREKEEKEKQKEAERAKKEKERLLQEDKLHEKEEKDRKDK 997


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +1

Query: 331  NHTRS*VTTENE*VRRHLDR*NYHSRSRTRRLSSNHARVDTMLTYAELP 477
            +H RS   +E+   RR+    N HS SR RR S NH      LT   LP
Sbjct: 980  DHRRSSTRSEHSVQRRYS---NEHSPSRKRRNSDNHGHKKHSLTGVSLP 1025


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = -1

Query: 756 ILSSRKMRIKEKEQGSASRMRMKIMKKVNPRAKKRKCRIMPKAK 625
           IL  R+   +E+E+ + + +R +++ K NP A+ +  +I+P  K
Sbjct: 724 ILRQREEEREEEERRNIAMLRQQMVHKANPIARFKGVQILPSEK 767


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 732 IKEKE-QGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAWRP 574
           +K+ E Q  A+ +R++++++ N + +     +M  A  + PR+  ++  T WRP
Sbjct: 822 VKDMERQVMANNIRIQLLEEQNDKLRSSITLLM-NASANAPRKTAQDPMTLWRP 874


>SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 732 IKEKE-QGSASRMRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAWRP 574
           +K+ E Q  A+ +R++++++ N + +     +M  A  + PR+  ++  T WRP
Sbjct: 17  VKDMERQVMANNIRIQLLEEQNDKLRSSITLLM-NASANAPRKTAQDPMTLWRP 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,954,908
Number of Sequences: 59808
Number of extensions: 394357
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)