Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120199.Seq
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    28   1.6  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.7  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   6.5  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.5  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   8.6  
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    25   8.6  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    25   8.6  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.6  

>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 540 SFSDHKLHFVRKLVTSGWNLLCIKANVLNTTAAI 439
           +F +H L+F   +VT+ WN LC K   +  +A++
Sbjct: 300 AFYNHDLNFRSGMVTT-WNKLCFKGGRIEVSASL 332


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 680 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLEN 504
           S S  +++SV +    I +  GLS ++ +  +  +  +G+P   +S VSVT N   + N
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSN 235


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 210 RVKCNKVRTVTEIVNAMKRSKKPTNWPNL 296
           R+K +++ T T+ ++ +K++KK  N+P L
Sbjct: 187 RIKKSQLNTATKEISLLKKAKKFPNFPKL 215


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 473  IHNRFHPLVTNFLTKWSLWSL--KLMTQAFPEN-PFCLQKTRGC 595
            I +++H  V     +WSLW+   KL+TQ    N P    +T  C
Sbjct: 2418 IWDKWHAFVPRTYDQWSLWNTVDKLLTQYVNANIPSISMETTAC 2461


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 565  PILFTENEGVLLCSVDRPSIVKMLSREFDTEALVNF 672
            P+L T+    L   +D P ++++  +  +T  ++NF
Sbjct: 1411 PMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNF 1446


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 704  LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 588
            L I+  QLSFS+    S + SRL  +T+   +     TP
Sbjct: 889  LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 464 LAFIHNRFHPLVTNFLTKWSL 526
           LA + NRFH    NFL+K SL
Sbjct: 77  LAALLNRFHEETDNFLSKLSL 97


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 446 AVVFSTLAFIHNRFHPLVTNFLTKWSLWSLKLMTQAFPENPFCLQKTR 589
           A+ +S +  I N  +P  T+FL  W   ++    +A P N   L  T+
Sbjct: 45  AIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTK 92


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 194 VYKNETCQMQQSSNGHRNCKRDEKIQKT 277
           +Y N TC + QSSN   +  R+  +Q T
Sbjct: 236 LYPNSTCIVYQSSNEPNDVVRNFSVQNT 263


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 540 SFSDHKLHFVRKLVTSGWNLLCIKANVLNTTAAI 439
           +F +  L+F R  +   WN LC+K  ++  +A++
Sbjct: 295 AFWNRDLNF-RSGMLQSWNKLCLKGGIIEVSASL 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,167
Number of Sequences: 5004
Number of extensions: 57646
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)