Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120199.Seq
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_47054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.9
SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04) 28 6.9
SB_19422| Best HMM Match : Mnd1 (HMM E-Value=4.3) 28 6.9
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 28 9.1
SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17) 28 9.1
SB_40941| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_25353| Best HMM Match : Vicilin_N (HMM E-Value=3.5) 28 9.1
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 28 9.1
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -2
Query: 698 IRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVN-KMGSPGMLVSLVSVTTN 522
+ L S +F + +NS LT++ L + + T + S +G ++VS+ SVTTN
Sbjct: 737 VTPLLFSQERFERFEHNNSLEIKLTVNILQNQGSRTMTSSYYLAIGILSIIVSITSVTTN 796
Query: 521 SILL 510
S++L
Sbjct: 797 SLIL 800
>SB_47054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 552 ACVISFSDHKLHFVRKLVTSGWNLLCIKANVL 457
A I SDHKL + L T W+ LCI +L
Sbjct: 36 AQTIDNSDHKLCSAKALSTMKWSKLCISLGIL 67
>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 260 EKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 367
+K +K + L + +LK L E Y+ LK K L KY+
Sbjct: 89 QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 532 TETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 639
+E D SI P + N G L+C VDR SI ++ S
Sbjct: 37 SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71
>SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)
Length = 1481
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 221 QQSSNGHRNCKRDEKIQKTYELAEFDLKNLSS-LESYETLKIKLALSK 361
+Q +N RN +RDE++ Y E L LSS L S E KL K
Sbjct: 1154 EQEANRSRNGERDEEVYDLYSRLEGKLSGLSSQLASKEIEICKLLKEK 1201
>SB_19422| Best HMM Match : Mnd1 (HMM E-Value=4.3)
Length = 386
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +2
Query: 245 NCKRDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAML-----STLEMTQPLLE 409
N K DE+ K E +E+ KN++ L ++ I+ +S M ++ +L+ QP
Sbjct: 8 NKKVDEQKSKLAETSEYPFKNMTKLRHVQSRPIEQKISVQMTLVLDSDADSLKTIQPKTH 67
Query: 410 IFRN 421
F N
Sbjct: 68 YFDN 71
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = -1
Query: 618 RSVDGAQQHPLVFCKQNGFSGNACVISFSDHKLHFVRKLVTSGWNLLCIKANVLNTTAAI 439
R GA + + C + GF+G C + + K+ + ++ WN L + +V+ + +
Sbjct: 400 RKRTGASKGFICACPE-GFTGIKCEFYYGEDKVSLILEMSIKQWNTLKFQESVVVSFNEL 458
Query: 438 C 436
C
Sbjct: 459 C 459
>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +2
Query: 296 DLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFSTLAFI 475
+ KN+SS Y T K K +L++ + + + + PL+E+FR + ++ + + + +
Sbjct: 275 ETKNMSSF--YWTKKYKKSLARSLREAAVIHLGVPLVELFRYLSGQHRVHCLPSNASSGL 332
Query: 476 HNRFHPLV 499
+R P V
Sbjct: 333 ASRPVPFV 340
>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 1414
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +2
Query: 311 SSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFSTLAFIHNRFH 490
SS +++ T KIK ++K L+ PL + RNK + V S AF +N+
Sbjct: 969 SSDKAWMTSKIKALIAKRQKFLAMYGKDSPLFKSVRNKV----LLTVKNSKRAFYNNKVK 1024
Query: 491 PLVTNFLTKW 520
L + +W
Sbjct: 1025 NLKETCVGRW 1034
>SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)
Length = 227
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 245 NCKRDEKIQKTYELAEFDLKNLSSLESY-ETLKIKLALSKYMAMLSTLEMTQPLLEIFRN 421
N K +EK K Y+L L+ L+ ++ Y ETL+ + K + T + Q EI +
Sbjct: 113 NKKIEEKKAKLYDLERRHLRALNKIDHYEETLRASEQIGKRVVTNYTPKSDQEYQEIISD 172
Query: 422 KADTRQIAA 448
D + AA
Sbjct: 173 LRDGIKHAA 181
>SB_40941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 105 KRDRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNAMKRSKK 275
K R YE+F+RY + K VV KR N R +I N M+ +K
Sbjct: 15 KIKREYETFRRYFGMRDVGFAVEKCTVVHLPFPQKRNPLNVPRLRVQITNRMRDDQK 71
>SB_25353| Best HMM Match : Vicilin_N (HMM E-Value=3.5)
Length = 306
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 105 KRDRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNAMKRSKK 275
K R YE+F+RY + K VV KR N R +I N M+ +K
Sbjct: 15 KIKREYETFRRYFGMRDVGFAVEKCTVVHLPFPQKRNPLNVPRLRVQITNRMRDDQK 71
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 698 IRTLQLSFSKFT--KASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSP 558
I +++LS S T +S++ ++LS L+ LST STPS S P
Sbjct: 183 IGSVELSSSAATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKP 231
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,841,022
Number of Sequences: 59808
Number of extensions: 417176
Number of successful extensions: 916
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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