Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120199.Seq
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical pr...    34   0.092
AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical ...    34   0.092
AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.      34   0.092
Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   3.5  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    29   4.6  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   6.0  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +2

Query: 386 EMTQPLLEIFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFLTKWSLWSLKLMTQAFPEN 565
           E T+ LL I   K  T  + AV+  TL +     H   TN L KW +  LKL +     N
Sbjct: 264 ERTKLLLNI---KVQTTDMKAVIEKTLDYRSKCIHAAATN-LRKWGIMLLKLKSIFHTLN 319

Query: 566 PFCLQKTRGC----CCAPSTD 616
            F +  T+ C    C  P  D
Sbjct: 320 MFSVDVTQKCLIAECWVPEAD 340


>AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +2

Query: 386 EMTQPLLEIFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFLTKWSLWSLKLMTQAFPEN 565
           E T+ LL I   K  T  + AV+  TL +     H   TN L KW +  LKL +     N
Sbjct: 264 ERTKLLLNI---KVQTTDMKAVIEKTLDYRSKCIHAAATN-LRKWGIMLLKLKSIFHTLN 319

Query: 566 PFCLQKTRGC----CCAPSTD 616
            F +  T+ C    C  P  D
Sbjct: 320 MFSVDVTQKCLIAECWVPEAD 340


>AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.
          Length = 865

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +2

Query: 386 EMTQPLLEIFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFLTKWSLWSLKLMTQAFPEN 565
           E T+ LL I   K  T  + AV+  TL +     H   TN L KW +  LKL +     N
Sbjct: 264 ERTKLLLNI---KVQTTDMKAVIEKTLDYRSKCIHAAATN-LRKWGIMLLKLKSIFHTLN 319

Query: 566 PFCLQKTRGC----CCAPSTD 616
            F +  T+ C    C  P  D
Sbjct: 320 MFSVDVTQKCLIAECWVPEAD 340


>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = -2

Query: 641 RLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSV 531
           RL+I  I GLS+  +STPS  V++   P  L S+V++
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAI 296


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
            R03E1.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 529  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 630
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 529  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 630
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 623 IDGLSTEHNSTPSFSVNKMGSPGML 549
           I  L T H STPS    ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166


>U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical
           protein F58F9.6 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
 Frame = +2

Query: 518 WSLWSLKLMTQA---FPENPFCLQKTRGCCCAPSTDRLSLKC 634
           WS WS  +   A   +     CL  T GC C  ST   S KC
Sbjct: 127 WSSWSGYIRNYASNGWERTRSCLSGTAGCQCTGSTVETSNKC 168


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
           protein F28B3.1 protein.
          Length = 1539

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 494 LVTNFLTKWSLWSLKLMTQAFPENPFCLQKTRGCCCAPSTD 616
           LV +    WSL S      AF  +P+ L+    C CA S++
Sbjct: 588 LVADGANPWSLSSCDAFAAAFTPSPYSLRPDAMCPCAGSSE 628


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 557 PENPFCLQKTRGCCCAPSTD 616
           PEN FC + T G CC P  D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 623 IDGLSTEHNSTPSFSVNKMGSPGML 549
           I  L T H STPS    ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,617,599
Number of Sequences: 27780
Number of extensions: 321922
Number of successful extensions: 865
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)