Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120199.Seq
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24760.1 68416.m03108 F-box family protein   ; similar to SKP...    30   1.4  
At5g06670.1 68418.m00753 kinesin motor protein-related                 29   3.2  
At4g11070.1 68417.m01798 WRKY family transcription factor other ...    29   3.2  
At2g32660.1 68415.m03992 disease resistance family protein / LRR...    28   7.5  
At4g11100.1 68417.m01802 expressed protein                             27   9.9  
At3g20520.1 68416.m02598 glycerophosphoryl diester phosphodieste...    27   9.9  

>At3g24760.1 68416.m03108 F-box family protein   ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 383

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/63 (22%), Positives = 31/63 (49%)
 Frame = +2

Query: 344 KLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFLTKWS 523
           +LA+  Y  +L + E+  PL   FR+  D + + + +F    ++ + +   +++F     
Sbjct: 171 RLAVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFISSFCLDSY 230

Query: 524 LWS 532
            WS
Sbjct: 231 TWS 233


>At5g06670.1 68418.m00753 kinesin motor protein-related 
          Length = 992

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
 Frame = +2

Query: 209  TCQMQQSSNGHRNCKRDEKI--QKTYELAEFDLKNLSSLESYETLKI---KLA----LSK 361
            TC MQQSS      K +EK+   + +E+ E  LK     E  E L+I   KLA     +K
Sbjct: 785  TCHMQQSSQSPN--KNEEKVIEAQAFEIEELKLKAAELSELNEQLEIRNKKLAEESSYAK 842

Query: 362  YMAMLSTLEMTQPLLEIFRNKADTRQIAA 448
             +A  + +E+     EI R      ++AA
Sbjct: 843  ELASAAAIELKALSEEIARLMNHNERLAA 871


>At4g11070.1 68417.m01798 WRKY family transcription factor other
           putative proteins, Arabidopsis thaliana
          Length = 313

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 653 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLV-SLVSVTTN 522
           VS+ + +IL ++G +T+HN T   + + +  PG +  S  S+T N
Sbjct: 53  VSSFKKAILMLNGSTTQHNPTIELAPDPLAHPGKVPGSPASITGN 97


>At2g32660.1 68415.m03992 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-4
           [Lycopersicon hirsutum] gi|2808683|emb|CAA05268
          Length = 589

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 428 DTRQIAAVVFSTLAFIHNRFH-PLVTNFLTKWSLWSLKL 541
           D   +A      L   HNRF   L TN+   WS+ SLK+
Sbjct: 331 DQSSLAFPKLQILEISHNRFTGSLPTNYFANWSVKSLKM 369


>At4g11100.1 68417.m01802 expressed protein
          Length = 287

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 120 YESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNAMKRSK 272
           YE+ K +H + +     S   ++++C+K +R K    +T  E+   M+  +
Sbjct: 41  YEAIKLHHENKAKELEVSNKRLLEECMKERREKAKVRKTFEEMKKTMESER 91


>At3g20520.1 68416.m02598 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to glycerophosphodiester phosphodiesterase
           (GI:1399038) [Borrelia hermsii]
          Length = 729

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
 Frame = +2

Query: 212 CQMQQSSNGHRNCKRDEKIQKTYELAEFDLKNLSSLESYETLKIK--LALSKYMAMLSTL 385
           C +Q S +    C     +  +  + E   +NLSS+ S    +       S  M+ + TL
Sbjct: 370 CNVQMSKDKIPFCMSSFDLINSTNVIETSFRNLSSVVSEINPRRSGIYTFSLTMSQIQTL 429

Query: 386 EMTQPLLE----IFRNKADTRQIAAVVFSTLAFIHNRFHPLV 499
           + T   LE    +FRN  + +    +  S   F+ NR+  L+
Sbjct: 430 KPTISNLEKDSGLFRNPRNNKAGKFLTLSEFLFLPNRYSSLL 471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,825
Number of Sequences: 28952
Number of extensions: 291431
Number of successful extensions: 732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)