Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120198.Seq
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 123 3e-29
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 97 3e-21
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 77 3e-15
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 62 9e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 59 8e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 58 1e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 58 1e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 57 3e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 56 4e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 2e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 53 5e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 51 2e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 50 3e-07
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 50 4e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 49 9e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 49 9e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 49 9e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 44 2e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 44 3e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 43 6e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 41 2e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 37 0.003
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 35 0.012
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.036
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.036
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 3.1
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 26 5.4
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 26 7.2
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 7.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 9.5
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 25 9.5
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 123 bits (297), Expect = 3e-29
Identities = 57/88 (64%), Positives = 68/88 (77%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ +G++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFG 219
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+S +RNTCV+GG P+ Q RDL RGVE
Sbjct: 220 KSSRIRNTCVYGGVPRGPQIRDLIRGVE 247
Score = 98.7 bits (235), Expect = 8e-22
Identities = 43/86 (50%), Positives = 58/86 (67%)
Frame = +2
Query: 254 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLL 511
K +G++ PTPIQ Q WP+AMSG++++
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMV 163
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 753 GSRIVIATPGRLIDFL 800
G I IATPGRL+D L
Sbjct: 245 GVEICIATPGRLLDML 260
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 97.1 bits (231), Expect = 3e-21
Identities = 43/88 (48%), Positives = 62/88 (70%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IGVA+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFL 515
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+R C +GGAP ++Q DL+RG E
Sbjct: 516 KLLNIRACCAYGGAPIKDQIADLKRGAE 543
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 436
+ F K+FY + SP EV+E R + + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLL 511
++GY++PT IQAQ P SG++++
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVI 459
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 744 LGEGSRIVIATPGRLIDFL 800
L G+ IV+ TPGR+ID L
Sbjct: 538 LKRGAEIVVCTPGRMIDVL 556
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 77.0 bits (181), Expect = 3e-15
Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAA 669
K+ IG+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 670 DFGHTSYVRNTCVFGGAPKREQARDLERG 756
F R V GG EQ+ + +G
Sbjct: 347 KFAEPLGFRCVSVVGGHAFEEQSFQMSQG 375
Score = 45.2 bits (102), Expect = 1e-05
Identities = 17/59 (28%), Positives = 37/59 (62%)
Frame = +2
Query: 335 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLI 290
Score = 29.5 bits (63), Expect = 0.58
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3
Query: 744 LGEGSRIVIATPGRLIDFL 800
+ +G+ IV+ATPGRL+D L
Sbjct: 372 MSQGAHIVVATPGRLLDCL 390
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 62.1 bits (144), Expect = 9e-11
Identities = 32/81 (39%), Positives = 51/81 (62%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ +G+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q +
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLI 260
Query: 679 HTSYVRNTCVFGGAPKREQAR 741
+ ++ V+GGAPK EQAR
Sbjct: 261 QGTNLKAVVVYGGAPKSEQAR 281
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/44 (40%), Positives = 30/44 (68%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
PI F+E + +++G+K YKEPTPIQA WP ++G++++
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVV 206
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 58.8 bits (136), Expect = 8e-10
Identities = 29/79 (36%), Positives = 46/79 (58%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ +G+A+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFS 163
Query: 679 HTSYVRNTCVFGGAPKREQ 735
+ +R+ + GG EQ
Sbjct: 164 KGTDLRSVAIVGGVSLEEQ 182
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+ + + + G+K PTPIQ + P+ + G++++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 58.4 bits (135), Expect = 1e-09
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF 675
++ IG+AQTGSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAI 137
Query: 676 GHTSYVRNTCVFGGAPKREQARDLER 753
G + VR+ + GG QA L +
Sbjct: 138 GGSIGVRSVVIVGGMDMVTQAVALSK 163
Score = 31.5 bits (68), Expect = 0.14
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+E D + + + +G+K PTPIQ + P+ ++ ++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI 87
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 58.4 bits (135), Expect = 1e-09
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Frame = +1
Query: 517 AQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVAADFGH--- 681
AQTGSGKTLAY+LP + + P R G A+++APTREL QQI VA +
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPL 244
Query: 682 TSYVRNTCVFGGAPKREQARDLERGV 759
+ ++ + V GG K+ + + +GV
Sbjct: 245 SHWIVSCNVIGGEKKKSEKARIRKGV 270
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 57.2 bits (132), Expect = 3e-09
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRE 639
++ + AQTGSGKT ++ P + + + P P+ + G P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 640 LAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
L QI + + F + S+VR V+GGA R Q R +++G +
Sbjct: 267 LVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCD 307
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 56.4 bits (130), Expect = 4e-09
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Frame = +1
Query: 433 KDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDG 606
K+ G + + ++ +G A+TGSGKTLA+++P I ++ P R G G
Sbjct: 105 KEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG 163
Query: 607 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 759
I +++PTRELA QI VA + + V GGA +R +A L +GV
Sbjct: 164 VI--IISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGV 212
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 744 LGEGSRIVIATPGRLIDFL 800
L +G +++ATPGRL+D L
Sbjct: 208 LVKGVNLLVATPGRLLDHL 226
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.4 bits (125), Expect = 2e-08
Identities = 33/82 (40%), Positives = 44/82 (53%)
Frame = +1
Query: 508 IGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 687
IG A+TGSGKT A+ LP I + P G AL+L PTRELA QI + A G
Sbjct: 48 IGGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANL 102
Query: 688 YVRNTCVFGGAPKREQARDLER 753
+++ + GG Q+ DL +
Sbjct: 103 NLKHALIVGGMDMIRQSIDLSK 124
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 729 RASPGLGEGSRIVIATPGRLIDFL 800
R S L + +V+ATPGRL D +
Sbjct: 117 RQSIDLSKRPHVVVATPGRLADLI 140
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.8 bits (121), Expect = 5e-08
Identities = 31/85 (36%), Positives = 46/85 (54%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ +G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
Query: 679 HTSYVRNTCVFGGAPKREQARDLER 753
+ GG +E+ L R
Sbjct: 136 RLHSFSAGLIIGGNNYKEEKERLSR 160
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 663
K+ + A+TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 33.9 bits (74), Expect = 0.027
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +2
Query: 362 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+L+A
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 50.4 bits (115), Expect = 3e-07
Identities = 28/85 (32%), Positives = 44/85 (51%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
K+ +G A TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIA 354
Query: 679 HTSYVRNTCVFGGAPKREQARDLER 753
+ + GG + Q ++L +
Sbjct: 355 SFTDIMVCLCIGGLSLKLQEQELRK 379
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+ N + +G+ +G++ PT IQ + P+A+ GK+++
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIV 300
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 702 VCVWWCS*KRASPGLGEGSRIVIATPGRLIDFL 800
+C+ S K L + IVIATPGR ID +
Sbjct: 363 LCIGGLSLKLQEQELRKRPDIVIATPGRFIDHM 395
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 50.0 bits (114), Expect = 4e-07
Identities = 33/106 (31%), Positives = 51/106 (48%)
Frame = +1
Query: 442 GLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 621
G +R A + ++ + AQ+G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 622 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 759
LAPTRELAQQIQ+V G V GG R+ L+ GV
Sbjct: 93 LAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGV 138
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 48.8 bits (111), Expect = 9e-07
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +1
Query: 517 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 696
A+TG+GKTLA++L A + P +++L+PTRELA QI + A + + +R
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
Query: 697 NTCVFGGAPKREQARDLERG 756
+ GG K + + RG
Sbjct: 143 VSYAIGGNSKMREENAIRRG 162
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 48.8 bits (111), Expect = 9e-07
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 672
K+ + A TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 33.1 bits (72), Expect = 0.047
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+ N +++ V G+K+ TP+QA P+ + K+L+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.8 bits (111), Expect = 9e-07
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Frame = +1
Query: 442 GLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 615
G + S + ++ + + IG A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 616 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER 753
LV+APTRELA QI Q + +R + GG ++Q R L +
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNK 241
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/66 (36%), Positives = 38/66 (57%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
+ IG +Q+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMG 208
Query: 679 HTSYVR 696
+ V+
Sbjct: 209 KYTEVK 214
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 666
++ + A TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 42.7 bits (96), Expect = 6e-05
Identities = 25/97 (25%), Positives = 45/97 (46%)
Frame = +1
Query: 442 GLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 621
G +R + + ++ + A+ G+GKT A+++P++ ++ + + L+
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLI 117
Query: 622 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 732
L PTRELA Q QV G V+ GG R+
Sbjct: 118 LVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRD 154
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*LKRVPAK 538
FE+ + G+ G++ P+PIQ + PIA+SG+++LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 41.1 bits (92), Expect = 2e-04
Identities = 31/105 (29%), Positives = 47/105 (44%)
Frame = +1
Query: 442 GLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 621
G + A S + ++ I AQ+G+GKT + + + I+ +R AL+
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALI 94
Query: 622 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG 756
L+PTRELA QIQ V G V+ GG + L+ G
Sbjct: 95 LSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYG 139
Score = 34.3 bits (75), Expect = 0.020
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +2
Query: 326 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 506 LLA 514
++A
Sbjct: 61 VIA 63
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.1 bits (82), Expect = 0.003
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
D+G + + S + + + A++G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 616 -LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGG 717
LVL TRELA QI+ A F + VR +GG
Sbjct: 122 VLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGG 157
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +1
Query: 517 AQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 654
A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 180 AATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.5 bits (73), Expect = 0.036
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 508 IGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 654
I V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1210 ITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.5 bits (73), Expect = 0.036
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 508 IGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 654
I V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1210 ITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 607 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 750
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Frame = +2
Query: 221 SEHASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 382
++ A R+G +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 383 IQYFEEANFPDYVQQGVKT 439
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Frame = +3
Query: 525 GFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW 677
GF + G + HC H++ AY E F Y R++T + C R W
Sbjct: 33 GFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRLW 89
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 648
K+ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 9.5
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +1
Query: 415 LCATRCKDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIR 594
+CA R +T + + D+ + F+G A TGSGKT+A L ++N P +
Sbjct: 1127 ICAKRFSFFNAVQTQFFHTIYHTDTNI---FVG-APTGSGKTMAAELATWRALHNYPKSK 1182
Query: 595 RGDGPIALVLAPTRELAQQIQQVAADFGH 681
+ +AP + L +++ D+GH
Sbjct: 1183 ------VVYIAPMKAL---VKERVKDWGH 1202
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Frame = +3
Query: 507 YWRSSNGFRQNVGLHL------ASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCC 668
+W F +G+ L A AHKQ ER + L ++Q + S SCC
Sbjct: 158 WWPLKETFENKLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSWQLAAFERSVSCC 217
Query: 669 R 671
+
Sbjct: 218 K 218
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 443 PLSLHLVAHNQENL--LLQSIE 384
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,730
Number of Sequences: 5004
Number of extensions: 67676
Number of successful extensions: 238
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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