Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120198.Seq
(801 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 101 5e-22
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 76 4e-14
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 7e-11
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 64 1e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 7e-10
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 60 2e-09
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 58 6e-09
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 55 8e-08
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 54 2e-07
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 7e-07
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 50 2e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 50 3e-06
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 48 7e-06
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 44 1e-04
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 41 0.001
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 40 0.002
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 40 0.002
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 40 0.002
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 38 0.009
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 37 0.017
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 36 0.029
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 31 0.82
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 2.5
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 4.4
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 29 5.8
SB_12680| Best HMM Match : Ras (HMM E-Value=3.4e-05) 28 7.7
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 101 bits (243), Expect = 5e-22
Identities = 46/72 (63%), Positives = 57/72 (79%)
Frame = +1
Query: 547 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 726
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA G +R+TC++GGAPK
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPK 172
Query: 727 REQARDLERGVE 762
Q R+LERGVE
Sbjct: 173 GPQIRELERGVE 184
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +2
Query: 308 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 475
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 97.5 bits (232), Expect = 1e-20
Identities = 45/88 (51%), Positives = 60/88 (68%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IG+A+TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL QQI A FG
Sbjct: 555 RDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFG 614
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+ VFGG K EQ++ L+ G E
Sbjct: 615 KAYNIHVVAVFGGGNKYEQSKALQEGAE 642
Score = 72.9 bits (171), Expect = 3e-13
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PFNKNFY+ HP + K+S E+++ R + VSG P F F + + ++
Sbjct: 475 KPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRK 534
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLA*LK----RVPAKRWP 547
+ Y +PT IQ Q PIA+SG++++ K + A WP
Sbjct: 535 LEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWP 574
Score = 31.9 bits (69), Expect = 0.62
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 735 SPGLGEGSRIVIATPGRLID 794
S L EG+ IV+ATPGRLID
Sbjct: 634 SKALQEGAEIVVATPGRLID 653
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 75.8 bits (178), Expect = 4e-14
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVA 666
++ IGVA+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++
Sbjct: 139 RDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEI 198
Query: 667 ADFGHTSYVRNTCVFGGAPK 726
FG +R V GGA +
Sbjct: 199 LKFGRPLGIRTVSVIGGADR 218
Score = 51.2 bits (117), Expect = 1e-06
Identities = 20/60 (33%), Positives = 37/60 (61%)
Frame = +2
Query: 332 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 64.9 bits (151), Expect = 7e-11
Identities = 38/105 (36%), Positives = 53/105 (50%)
Frame = +1
Query: 442 GLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 621
G +R + L ++ + AQTGSGKT AY+LP + + Q P+AL
Sbjct: 498 GYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALC 557
Query: 622 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG 756
+APTRELA+QI A F + ++ +GG QA LERG
Sbjct: 558 VAPTRELAKQIYIEARKFSDHTPIKVCVCYGGVSVPYQASQLERG 602
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 356 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
VSG I F E F + + + GY+ PTP+Q PI M+G++L+A
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMA 521
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 64.5 bits (150), Expect = 1e-10
Identities = 28/52 (53%), Positives = 38/52 (73%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 654
++ IG+A+TGSGKTLAY LP + + + P GD P+AL+L PTREL QQ+
Sbjct: 110 RDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 48.8 bits (111), Expect = 5e-06
Identities = 28/101 (27%), Positives = 48/101 (47%)
Frame = +2
Query: 266 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 445
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 446 YKEPTPIQAQGWPIAMSGKNLLA*LKRVPAKRWPTSCQPLC 568
++ PTPIQ Q MSG++++ + K S PLC
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSL-PLC 131
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 744 LGEGSRIVIATPGRLID 794
L EG+ +V+ATPGRL+D
Sbjct: 214 LREGADVVVATPGRLLD 230
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 61.7 bits (143), Expect = 7e-10
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 436
QPF K+FY P + K +P E +E+R + E + V G P++ + + + +K
Sbjct: 62 QPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLK 121
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLLA 514
Y++PTPIQAQ P+ MSG++++A
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIA 147
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/76 (38%), Positives = 39/76 (51%)
Frame = +1
Query: 535 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 714
K +Y P + P I G IA+V+ PTRELA QI + F + +R CV+G
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYG 180
Query: 715 GAPKREQARDLERGVE 762
G EQ +L+RG E
Sbjct: 181 GTGISEQIAELKRGAE 196
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 60.5 bits (140), Expect = 2e-09
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVAADF 675
++ I AQ+G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V
Sbjct: 123 RDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLAL 182
Query: 676 GHTSYVRNTCVFGGAPKREQARDLERGV 759
G +V+ GG RE LE GV
Sbjct: 183 GDYMHVKCHACIGGTNVREDRMKLEEGV 210
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 675 WTHILCS*HVCVWWCS*KRASPGLGEGSRIVIATPGRLIDFL 800
+ H+ C H C+ + + L EG +V+ TPGR+ D +
Sbjct: 185 YMHVKC--HACIGGTNVREDRMKLEEGVHVVVGTPGRVFDMI 224
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Frame = +1
Query: 433 KDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGP 609
+D G+ +S Y ++ IG A+TG+GKTL++ LP + + + + +RG P
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAP 148
Query: 610 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
LV+APTRELA+Q+ + S + C++GG P Q + G++
Sbjct: 149 KVLVMAPTRELAKQVGNEFENL--KSNLEVYCIYGGMPYEPQENAINSGLD 197
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQVA 666
++ + AQTGSGKT A++LP + + N P A+ +APTRELA QI A
Sbjct: 749 RDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEA 808
Query: 667 ADFGHTSYVRNTCVFGGAPKREQARDLERG 756
F H + +R +GG Q R L+ G
Sbjct: 809 RKFAHGTMLRPVVCYGGVSVSHQLRQLQSG 838
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +2
Query: 347 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++A
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMA 753
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 58.4 bits (135), Expect = 6e-09
Identities = 27/91 (29%), Positives = 48/91 (52%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 460
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 461 PIQAQGWPIAMSGKNLLA*LKRVPAKRWPTS 553
PIQ Q P+ +SG++++ K P+S
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLLPSS 251
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 57.6 bits (133), Expect = 1e-08
Identities = 32/109 (29%), Positives = 56/109 (51%)
Frame = +1
Query: 433 KDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 612
KD G +A ++ +G A+TGSGKTLA+++P +V + + + +G
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRNGTG 646
Query: 613 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 759
++++PTREL+ Q VA D + GG ++ +A L++GV
Sbjct: 647 VIIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEAERLQKGV 695
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 54.8 bits (126), Expect = 8e-08
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ +G A+TGSGKTLA+++P I + Q DG ALV++PTRELA Q +V G
Sbjct: 88 RDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIG 146
Query: 679 HTSYVRNTCVFGGAP-KREQARDLERGV 759
+ + + GG K EQ R ++ +
Sbjct: 147 NKHDLSAGLIIGGKDLKNEQKRIMKTNI 174
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
++ F + G+ G+ PT IQ QG P+A+SG+++L
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVL 91
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 53.6 bits (123), Expect = 2e-07
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +1
Query: 508 IGVAQTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQIQQVAAD 672
I AQTGSGKTLAY+ P +VH + R G P A ++ P RELA QI + A
Sbjct: 419 ICAAQTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKS 477
Query: 673 FGHTSYVRNTCVFGGAPKREQARDLERGVE 762
H + R+ + GG ++ DLE V+
Sbjct: 478 LCHHARFRSVGLIGGRKQKWMRDDLESPVD 507
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 51.6 bits (118), Expect = 7e-07
Identities = 35/105 (33%), Positives = 51/105 (48%)
Frame = +1
Query: 442 GLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 621
G ++ A + ++ I AQ+G+GKT + + + I+ Q +R P ALV
Sbjct: 16 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQALV 70
Query: 622 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG 756
L+PTRELA QIQ+V G V+ GG E R L+ G
Sbjct: 71 LSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYG 115
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/80 (38%), Positives = 42/80 (52%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
K+ IG+A+TGSGKT A+ LP + + + P AL+L PTRELA QI + G
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALG 56
Query: 679 HTSYVRNTCVFGGAPKREQA 738
V+ + GG QA
Sbjct: 57 SGIGVKCAVIVGGIDMMSQA 76
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 50.0 bits (114), Expect = 2e-06
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVW-KEFIGVAQTGSGKTLAYILPAIVHIN-------NQPPI 591
D G + S + + ++ ++ IG A+TGSGKTLA+ +P I HI Q P
Sbjct: 147 DQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPS 206
Query: 592 -------RRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 750
+G +AL++APTRELA Q++ + V+ + GG +Q R L+
Sbjct: 207 DKESDLESQGYPLLALIMAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLK 266
Query: 751 RGVE 762
+ E
Sbjct: 267 QRPE 270
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 49.6 bits (113), Expect = 3e-06
Identities = 31/83 (37%), Positives = 43/83 (51%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IG A+TGSGKT A+ LP + + + P G A+VL PTRELA QI G
Sbjct: 45 RDCIGCAKTGSGKTAAFALPILQKLCDDP-----YGIFAVVLTPTRELAFQIADQFKVLG 99
Query: 679 HTSYVRNTCVFGGAPKREQARDL 747
++ + GG +QA L
Sbjct: 100 RPIGLKEAVIVGGLDMMKQALSL 122
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/73 (34%), Positives = 43/73 (58%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
K+ + +A+TGSGKT A+++P + G AL+L+PTRELA Q Q+ + G
Sbjct: 319 KDVVAMARTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQKFIKELG 375
Query: 679 HTSYVRNTCVFGG 717
+ ++++ + GG
Sbjct: 376 RFTGLKSSVILGG 388
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.4 bits (110), Expect = 7e-06
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +2
Query: 320 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 487
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 488 AMSG 499
G
Sbjct: 197 MAHG 200
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +2
Query: 347 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++A
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMA 176
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQIQQVAA 669
++ GVA GSGK LAY+LP I I + +GP+ L+L + ++ V
Sbjct: 225 RDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCE 284
Query: 670 D-FGHTSYVRNTCVFGGAPKREQARDLERGVE 762
D + R +FGG + ++ L G E
Sbjct: 285 DLIRNRRRTRVQMIFGGGAEEDRIVPLINGCE 316
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/50 (46%), Positives = 27/50 (54%)
Frame = +1
Query: 607 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG 756
P ALVL+PTRELA QIQ+V G V+ GG E R L+ G
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYG 53
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G + + + ++ + A+ G+GKT AY++P + + + A
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----A 118
Query: 616 LVLAPTRELAQQIQQVAADFG 678
LVL PTRELA Q Q+ + G
Sbjct: 119 LVLVPTRELALQTSQICIELG 139
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*LKRVPAK 538
FE+ + G+ G+ +P+PIQ + P+A++G+++LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G + + + ++ + A+ G+GKT AY++P + + + A
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----A 118
Query: 616 LVLAPTRELAQQIQQVAADFG 678
LVL PTRELA Q Q+ + G
Sbjct: 119 LVLVPTRELALQTSQICIELG 139
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*LKRVPAK 538
FE+ + G+ G+ +P+PIQ + P+A++G+++LA K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 37.9 bits (84), Expect = 0.009
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = +1
Query: 478 LADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQ 657
LAD V I +Q+G+GKT A++L + ++ P P + L+PT ELA+Q
Sbjct: 138 LADPPV--NMIAQSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTG 190
Query: 658 QVAADFG-HTSYVR-NTCVFGGA-PKREQARD 744
+VA G H +++ N V G P+ ++ D
Sbjct: 191 KVAEAMGKHCPHIKINYAVRGNQFPRGQKCTD 222
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 344 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 496
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLA 139
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 37.1 bits (82), Expect = 0.017
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +1
Query: 427 RCKDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG 606
+ K G+ + L + K + ++TG+GK+L ++LP++ Q P RG G
Sbjct: 174 KLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP-GRGYG 227
Query: 607 PIALVLAPTRELA-QQIQQVAADFGHTSYV 693
I ++ PTRELA Q + +V+ G S V
Sbjct: 228 TI--IVVPTRELASQMLYEVSRLLGDKSIV 255
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +1
Query: 469 SSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 648
+S + + + K+ A TG+GKT A++LP + + +P + LV+ PTRELA
Sbjct: 38 ASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELAI 95
Query: 649 Q 651
Q
Sbjct: 96 Q 96
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
+ V +G+ PTPIQA P+A+ GK++ A
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCA 52
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
I FE+ + + + V GYK+PTP+Q PI ++L+A
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMA 917
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPP 588
++ + AQTGSGKT A+++P + I + P
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRIYMEGP 942
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 31.5 bits (68), Expect = 0.82
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 502 EFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG- 678
+ I A++G+GKT + + A+ ++ I + ++L PTRE+A Q++ V G
Sbjct: 52 DLIAQAKSGTGKTCVFSVIALENV-----ITESNCIQIIILTPTREIAVQVKDVICAIGC 106
Query: 679 HTSYVRNTCVFGGAPKREQARDLE 750
H + GG E + L+
Sbjct: 107 HYDGLACKVFIGGISLEEDKKALK 130
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 368 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 481
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 681 HILCS*HVCVWWCS*KRASPGLGEGSRIVIATPGRLIDFL 800
H+ C H C+ + + L EG +V+ TPGR+ D +
Sbjct: 2 HVKC--HACIGGTNVREDRMKLEEGVHVVVGTPGRVFDMI 39
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 278 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 418
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 4.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 775 VAMTILLPSPSPGLALF*EHHQTHTCYEH 689
+ T ++ PSP + ++ HHQ H + H
Sbjct: 191 ITSTTIITMPSPSIVIYRRHHQHHQHHHH 219
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 222 QNMRRPDWDSVHSNLSTKTFMIHILQFSKD 311
+N RR WDS HSN+S + H+ F D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795
>SB_12680| Best HMM Match : Ras (HMM E-Value=3.4e-05)
Length = 243
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/83 (24%), Positives = 35/83 (42%)
Frame = +1
Query: 466 SSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 645
S SRL+ + W E + A +GS +P ++ + N PP +RG + T E
Sbjct: 143 SPSRLSSALKWSEKVKEANSGS-------VPMVLVVENIPPSKRGKPMEWIGKGKTAESK 195
Query: 646 QQIQQVAADFGHTSYVRNTCVFG 714
+ + + A G + +G
Sbjct: 196 EVMDRFCAKHGFAGWFELNSRYG 218
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,027,982
Number of Sequences: 59808
Number of extensions: 516434
Number of successful extensions: 1333
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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