Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120198.Seq
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       57   2e-10

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 57.2 bits (132), Expect = 2e-10
 Identities = 26/59 (44%), Positives = 37/59 (62%)
 Frame = +2

Query: 338 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
           +N +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+A
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMA 238



 Score = 41.9 bits (94), Expect = 7e-06
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +1

Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQIQQVA 666
           ++ +  AQTGSGKT A+ +P I  +  +            P  ++++PTREL  QI Q  
Sbjct: 234 RDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQI 293

Query: 667 ADFGHTSYVRNTCVFGGAPKREQARDLERG 756
             F   S ++    +GG     Q   L  G
Sbjct: 294 VKFSLNSILKTVVAYGGTSVMHQRGKLSAG 323



 Score = 29.1 bits (62), Expect = 0.050
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 744 LGEGSRIVIATPGRLIDFL 800
           L  G  I++ATPGRL+DF+
Sbjct: 320 LSAGCHILVATPGRLLDFV 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,428
Number of Sequences: 438
Number of extensions: 4526
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)