Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120198.Seq
(801 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 128 3e-30
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 122 3e-28
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 122 3e-28
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 95 5e-20
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 94 1e-19
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 94 1e-19
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 94 1e-19
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 93 3e-19
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 92 5e-19
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 91 1e-18
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 87 1e-17
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 81 8e-16
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 74 1e-13
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 73 2e-13
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 73 3e-13
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 69 4e-12
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 69 4e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 67 1e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 67 1e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 66 3e-11
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 64 8e-11
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 62 4e-10
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 58 9e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 58 9e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 57 2e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 57 2e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 56 4e-08
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 56 4e-08
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 55 5e-08
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 54 8e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 54 8e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 51 1e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 50 2e-06
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 49 3e-06
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 48 5e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 48 7e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 48 7e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 48 1e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 46 3e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 46 4e-05
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 46 4e-05
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 45 5e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 45 7e-05
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 44 9e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 44 9e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 44 1e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 44 2e-04
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 44 2e-04
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 43 3e-04
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 43 3e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 42 4e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 4e-04
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 41 0.001
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 40 0.003
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 40 0.003
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 39 0.004
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 39 0.004
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 39 0.004
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 34 0.096
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 33 0.22
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 33 0.22
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 33 0.22
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 30 1.6
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 4.7
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 4.7
At4g27510.1 68417.m03951 expressed protein ; expression support... 29 4.7
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 6.3
At2g33420.1 68415.m04096 expressed protein 28 6.3
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 6.3
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 6.3
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 28 8.3
At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative... 28 8.3
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 8.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 128 bits (310), Expect = 3e-30
Identities = 56/88 (63%), Positives = 72/88 (81%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IG+A+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFG 196
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+S ++ TC++GG PK Q RDL++GVE
Sbjct: 197 SSSKIKTTCIYGGVPKGPQVRDLQKGVE 224
Score = 103 bits (246), Expect = 2e-22
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Frame = +2
Query: 233 SPR-LGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 410 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
PDYV + VK G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLI 140
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 744 LGEGSRIVIATPGRLIDFL 800
L +G IVIATPGRLID +
Sbjct: 219 LQKGVEIVIATPGRLIDMM 237
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 122 bits (294), Expect = 3e-28
Identities = 55/88 (62%), Positives = 71/88 (80%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IG+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
S VR+TC++GGAPK Q RDL RGVE
Sbjct: 263 LRSGVRSTCIYGGAPKGPQIRDLRRGVE 290
Score = 95.1 bits (226), Expect = 5e-20
Identities = 39/92 (42%), Positives = 61/92 (66%)
Frame = +2
Query: 236 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +3
Query: 744 LGEGSRIVIATPGRLIDFL 800
L G IVIATPGRLID L
Sbjct: 285 LRRGVEIVIATPGRLIDML 303
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 122 bits (294), Expect = 3e-28
Identities = 55/88 (62%), Positives = 71/88 (80%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IG+A+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG 262
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
S VR+TC++GGAPK Q RDL RGVE
Sbjct: 263 LRSGVRSTCIYGGAPKGPQIRDLRRGVE 290
Score = 95.1 bits (226), Expect = 5e-20
Identities = 39/92 (42%), Positives = 61/92 (66%)
Frame = +2
Query: 236 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +3
Query: 744 LGEGSRIVIATPGRLIDFL 800
L G IVIATPGRLID L
Sbjct: 285 LRRGVEIVIATPGRLIDML 303
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 95.1 bits (226), Expect = 5e-20
Identities = 44/88 (50%), Positives = 59/88 (67%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IGVA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFS 626
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+R V+GG+ +Q +L+RG E
Sbjct: 627 KPLGIRCVPVYGGSGVAQQISELKRGTE 654
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + + EV YR E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
+ Y++P PIQ Q PI MSG++ +
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCI 570
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 744 LGEGSRIVIATPGRLIDFL 800
L G+ IV+ TPGR+ID L
Sbjct: 649 LKRGTEIVVCTPGRMIDIL 667
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 93.9 bits (223), Expect = 1e-19
Identities = 44/88 (50%), Positives = 60/88 (68%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ + +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+S + TC++GGAPK Q RDLERG +
Sbjct: 255 RSSRISCTCLYGGAPKGPQLRDLERGAD 282
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA 514
QAQ WPIAM G++++A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 93.9 bits (223), Expect = 1e-19
Identities = 44/88 (50%), Positives = 60/88 (68%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ + +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+S + TC++GGAPK Q RDLERG +
Sbjct: 255 RSSRISCTCLYGGAPKGPQLRDLERGAD 282
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA 514
QAQ WPIAM G++++A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 93.9 bits (223), Expect = 1e-19
Identities = 44/88 (50%), Positives = 60/88 (68%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ + +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFG 254
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+S + TC++GGAPK Q RDLERG +
Sbjct: 255 RSSRISCTCLYGGAPKGPQLRDLERGAD 282
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA 514
QAQ WPIAM G++++A
Sbjct: 185 QAQSWPIAMQGRDIVA 200
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 92.7 bits (220), Expect = 3e-19
Identities = 43/88 (48%), Positives = 61/88 (69%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IG+A+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFS 325
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+R + V+GG K EQ ++L+ G E
Sbjct: 326 KAYGLRVSAVYGGMSKHEQFKELKAGCE 353
Score = 71.7 bits (168), Expect = 5e-13
Identities = 28/84 (33%), Positives = 49/84 (58%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
Y++PT IQ Q PI +SG++++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVI 269
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 744 LGEGSRIVIATPGRLIDFL 800
L G IV+ATPGRLID L
Sbjct: 348 LKAGCEIVVATPGRLIDML 366
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 91.9 bits (218), Expect = 5e-19
Identities = 43/88 (48%), Positives = 58/88 (65%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ IGVA+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F
Sbjct: 434 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFS 493
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+ V+GG+ +Q +L+RG E
Sbjct: 494 KALGIICVPVYGGSGVAQQISELKRGTE 521
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + + V YR E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
+ Y++P PIQAQ PI MSG++ +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCI 437
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 744 LGEGSRIVIATPGRLIDFL 800
L G+ IV+ TPGR+ID L
Sbjct: 516 LKRGTEIVVCTPGRMIDIL 534
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/88 (47%), Positives = 61/88 (69%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ + +A+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFG 531
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+S + TC++GGAPK Q ++LERG +
Sbjct: 532 RSSRISCTCLYGGAPKGPQLKELERGAD 559
Score = 64.9 bits (151), Expect = 6e-11
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Frame = +2
Query: 269 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 436
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLLA 514
+ G+ PTPIQAQ WPIA+ ++++A
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVA 477
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 87.4 bits (207), Expect = 1e-17
Identities = 41/88 (46%), Positives = 59/88 (67%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
++ + +A+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFG 325
Query: 679 HTSYVRNTCVFGGAPKREQARDLERGVE 762
+S + C++GGAPK Q +++ERGV+
Sbjct: 326 KSSKISCACLYGGAPKGPQLKEIERGVD 353
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 431 VKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V + G+ P+PIQAQ WPIAM ++++A
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 326 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 81.0 bits (191), Expect = 8e-16
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAA 669
++ IG+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETV 410
Query: 670 DFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
F H R T + GG EQ + +G E
Sbjct: 411 KFAHYLGFRVTSIVGGQSIEEQGLKITQGCE 441
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = +2
Query: 332 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 750 EGSRIVIATPGRLIDFL 800
+G IVIATPGRLID L
Sbjct: 438 QGCEIVIATPGRLIDCL 454
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVA 666
++ IG+A+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211
Query: 667 ADFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
+ G +++ CV+GG+ K Q + GV+
Sbjct: 212 REAGEPCGLKSICVYGGSSKGPQISAIRSGVD 243
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 320 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 493
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 494 SGKNLL 511
G++L+
Sbjct: 150 DGRDLI 155
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 73.3 bits (172), Expect = 2e-13
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 663
++ + AQTGSGKT A+ P I I ++R G P+A++L+PTRELA QI
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 664 AADFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
A F + + V+ +GG P +Q R+LERGV+
Sbjct: 257 AKKFSYQTGVKVVVAYGGTPINQQLRELERGVD 289
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLLA 514
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 72.5 bits (170), Expect = 3e-13
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 663
++ + AQTGSGKT A+ P I I I R G P+A++L+PTRELA QI
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 664 AADFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
A F + + V+ +GG P +Q R+LERGV+
Sbjct: 244 ARKFSYQTGVKVVVAYGGTPVNQQIRELERGVD 276
Score = 37.9 bits (84), Expect = 0.008
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 263 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLA 514
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 68.9 bits (161), Expect = 4e-12
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 663
++ + AQTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 664 AADFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
A F + + V+ +GG P +Q R+LERG +
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERGCD 281
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 68.9 bits (161), Expect = 4e-12
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQV 663
++ + AQTGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 664 AADFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
A F + + V+ +GG P +Q R+LERG +
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPIHQQLRELERGCD 281
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 67.3 bits (157), Expect = 1e-11
Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Frame = +1
Query: 433 KDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 603
KD G+ L ++ IG+A TGSGKTL ++LP I+ + PI G+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 604 GPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGV 759
GPIALV+ P+RELA+Q ++Q A Y +R+ GG R Q +++GV
Sbjct: 173 GPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGV 230
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/89 (30%), Positives = 49/89 (55%)
Frame = +2
Query: 245 GFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 424
G +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 66.9 bits (156), Expect = 1e-11
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Frame = +1
Query: 442 GLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIAL 618
G+++ + L + ++ IG A+TG+GKTLA+ +P I I RG P+ L
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCL 182
Query: 619 VLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVE 762
VLAPTRELA+Q+++ +F ++ +T C++GG P +Q R L+ GV+
Sbjct: 183 VLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVD 228
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 66.1 bits (154), Expect = 3e-11
Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Frame = +1
Query: 433 KDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINN-QPPIRRGDGP 609
K G+++ + L + ++ IG A+TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 610 IALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVE 762
LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L G++
Sbjct: 192 QCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGID 240
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 64.5 bits (150), Expect = 8e-11
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Frame = +1
Query: 433 KDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQP---PIRRGD 603
K+ G+ + L ++ IG+A TGSGKTL ++LP I+ + PI G+
Sbjct: 162 KEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGE 221
Query: 604 GPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGV 759
GPI L++ P+RELA+Q ++Q A Y +R+ GG R Q ++RGV
Sbjct: 222 GPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGV 279
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/77 (29%), Positives = 43/77 (55%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 460
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 461 PIQAQGWPIAMSGKNLL 511
PIQ QG P+ ++G++++
Sbjct: 171 PIQVQGLPVILAGRDMI 187
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 62.1 bits (144), Expect = 4e-10
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Frame = +1
Query: 427 RCKDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRR--- 597
+ K NG++ +S + +G A+TG GKTLA++LP + + N P +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 598 --GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
G P LVL PTRELA+Q+ +G + + + C++GG Q L+RGV+
Sbjct: 170 GYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVD 226
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 57.6 bits (133), Expect = 9e-09
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 669
K + A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 207
Query: 670 DFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
G + V GG P Q +++GVE
Sbjct: 208 MLGKGLPFKTALVVGGDPMSGQLYRIQQGVE 238
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 311 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 484
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 485 IAMSGKNLLA 514
A++GK+LLA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 57.6 bits (133), Expect = 9e-09
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 669
K + A TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 70
Query: 670 DFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
G + V GG P Q +++GVE
Sbjct: 71 MLGKGLPFKTALVVGGDPMSGQLYRIQQGVE 101
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 56.8 bits (131), Expect = 2e-08
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQV 663
++ I A+TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 199
Query: 664 AADFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
+ Y+ CV+GG Q L RGV+
Sbjct: 200 IKE--SAPYLSTVCVYGGVSYTIQQSALTRGVD 230
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +1
Query: 517 AQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 690
A TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H +
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHW 133
Query: 691 VRNTCVFGGAPKREQARDLERGV 759
+ V GG K ++ L +G+
Sbjct: 134 IVPGYVMGGEKKAKEKARLRKGI 156
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
MG++ PT +QAQ P+ +SG+++L
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Frame = +1
Query: 517 AQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 681
+ TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214
Query: 682 TSYVRNTCVFGGAPKREQARDLERGVE 762
+ R+ V GG+ R Q L ++
Sbjct: 215 HARFRSILVSGGSRIRPQEDSLNNAID 241
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 55.6 bits (128), Expect = 4e-08
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Frame = +1
Query: 433 KDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGP 609
K+ G Q + + K+ +G A+TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 610 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG 756
+V+ PTRELA Q + VA + + V GG +R +A+ + G
Sbjct: 164 -VIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASG 211
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 744 LGEGSRIVIATPGRLIDFL 800
+ GS +VIATPGRL+D L
Sbjct: 208 IASGSNLVIATPGRLLDHL 226
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 55.2 bits (127), Expect = 5e-08
Identities = 35/106 (33%), Positives = 54/106 (50%)
Frame = +1
Query: 430 CKDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 609
CK+ G+++ + + ++ +G+AQTGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 610 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 747
ALV+ PTRELA Q+ + G +R + + GG Q L
Sbjct: 128 FALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSL 173
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
FE ++ + K +G ++PTP+Q P ++G+++L
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 54.4 bits (125), Expect = 8e-08
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Frame = +1
Query: 433 KDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 612
K+ G R + + + ++ +G A+TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 613 ALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGV 759
LV+ PTRELA Q VA + H+ V V GG ++ +A L +GV
Sbjct: 229 VLVICPTRELAIQSYGVAKELLKYHSQTVGK--VIGGEKRKTEAEILAKGV 277
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/84 (25%), Positives = 36/84 (42%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
MG+ T IQA+ P M G+++L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVL 195
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 54.4 bits (125), Expect = 8e-08
Identities = 28/85 (32%), Positives = 51/85 (60%)
Frame = +1
Query: 502 EFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 681
+ + +A+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGK 123
Query: 682 TSYVRNTCVFGGAPKREQARDLERG 756
+ +R + + GG +Q +L +G
Sbjct: 124 FTDLRVSLLVGGDSMEDQFEELTKG 148
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE N V +K GYK PTPIQ + P+ +SG +++A
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +1
Query: 433 KDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP- 609
KD G + + L K+ + A+TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 610 --IALVLAPTRELAQQ 651
I LV+ PTRELA Q
Sbjct: 458 PIIVLVVCPTRELASQ 473
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVA 666
K I Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANC 471
Query: 667 ADFGHTSY-VRNTCVFGGAPKREQARDLERGVE 762
+ R+ V GG +R Q +LE+GV+
Sbjct: 472 RSISKSGVPFRSMVVTGGFRQRTQLENLEQGVD 504
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 49.2 bits (112), Expect = 3e-06
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = +1
Query: 430 CKDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHI-----NNQPPIR 594
C+ G + + L + K+ IG+AQTGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 595 RGDGP--IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 735
R P A VL+PTRELA QI + G +R + GG + +Q
Sbjct: 84 RRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQ 132
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 368 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 48.4 bits (110), Expect = 5e-06
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 669
K+ + A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAE 111
Query: 670 DFGHT-SYVRNTCVFGGAPKREQARDLE 750
F T V + + GG LE
Sbjct: 112 PFVSTLPNVNSVLLVGGREVEADMNTLE 139
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 48.0 bits (109), Expect = 7e-06
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +1
Query: 433 KDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGD--G 606
KD G + + L K+ + A+TG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 607 PI-ALVLAPTRELAQQ 651
PI ALV+ PTRELA Q
Sbjct: 130 PILALVICPTRELANQ 145
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 48.0 bits (109), Expect = 7e-06
Identities = 29/102 (28%), Positives = 50/102 (49%)
Frame = +1
Query: 430 CKDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 609
C+ G ++ ++ + + ++ A TGSGKT A+ LP + + +P +R
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KRVFAT 239
Query: 610 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 735
L+L PTRELA QI + + + ++ + GG REQ
Sbjct: 240 RVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQ 281
Score = 44.8 bits (101), Expect = 7e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 353 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 442 GLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIAL 618
G+++ S + K+ + A+TGSGKTLAY+LP + + + + ++ P A
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAF 124
Query: 619 VLAPTRELAQQI 654
+L P+REL QQ+
Sbjct: 125 ILVPSRELCQQV 136
Score = 35.1 bits (77), Expect = 0.055
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 320 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 500 KNLLA 514
K+++A
Sbjct: 84 KDVVA 88
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 651
K+ + A+TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/66 (34%), Positives = 42/66 (63%)
Frame = +1
Query: 454 TDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 633
TD S++ + + ++ +G A+TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 634 RELAQQ 651
RELA Q
Sbjct: 153 RELAAQ 158
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 45.6 bits (103), Expect = 4e-05
Identities = 32/86 (37%), Positives = 44/86 (51%)
Frame = +1
Query: 502 EFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 681
+ I AQ+G+GKT + + ++ + ALVLAPTRELAQQI++V G
Sbjct: 80 DVIQQAQSGTGKTATFCSGVLQQLDISLVQCQ-----ALVLAPTRELAQQIEKVMRALGD 134
Query: 682 TSYVRNTCVFGGAPKREQARDLERGV 759
V+ GG RE R L+ GV
Sbjct: 135 YLGVKAQACVGGTSVREDQRVLQSGV 160
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 45.2 bits (102), Expect = 5e-05
Identities = 32/86 (37%), Positives = 44/86 (51%)
Frame = +1
Query: 502 EFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 681
+ I AQ+G+GKT + + ++ + ALVLAPTRELAQQI++V G
Sbjct: 78 DVIQQAQSGTGKTATFCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQIEKVMRALGD 132
Query: 682 TSYVRNTCVFGGAPKREQARDLERGV 759
V+ GG RE R L+ GV
Sbjct: 133 YQGVKVHACVGGTSVREDQRILQAGV 158
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 699 HVCVWWCS*KRASPGLGEGSRIVIATPGRLIDFL 800
H CV S + L G +V+ TPGR+ D L
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 172
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 44.8 bits (101), Expect = 7e-05
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 666
K+ + A TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 44.4 bits (100), Expect = 9e-05
Identities = 32/86 (37%), Positives = 44/86 (51%)
Frame = +1
Query: 502 EFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 681
+ I AQ+G+GKT + + ++ + ALVLAPTRELAQQI++V G
Sbjct: 78 DVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQ-----ALVLAPTRELAQQIEKVMRALGD 132
Query: 682 TSYVRNTCVFGGAPKREQARDLERGV 759
V+ GG RE R L+ GV
Sbjct: 133 YLGVKVHACVGGTSVREDQRILQAGV 158
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 699 HVCVWWCS*KRASPGLGEGSRIVIATPGRLIDFL 800
H CV S + L G +V+ TPGR+ D L
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 172
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 335 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 502
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 503 NLLA 514
A
Sbjct: 180 ECFA 183
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 651
+E A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Frame = +1
Query: 439 NGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 606
+G+ + + L++ K+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 607 PIALVLAPTRELAQQI 654
AL+L PTRELA QI
Sbjct: 406 IFALILCPTRELASQI 421
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Frame = +1
Query: 496 WKEFIGVAQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVA 666
+K+ A TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVA 110
Query: 667 ADFGHT-SYVRNTCVFGGAPKREQARDLE 750
F T + V + + GG + + +E
Sbjct: 111 QPFVSTLANVNSVLLVGGREVKADMKIIE 139
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 43.6 bits (98), Expect = 2e-04
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKT--LAYILPAIVHINNQPPIRRGDGP 609
D G ++ L ++ I AQ+G+GKT +A + IV+I+++
Sbjct: 39 DYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQ------ 92
Query: 610 IALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGV 759
LVL+P+RELA Q ++ G HT+ + C+ GG E + LERGV
Sbjct: 93 -VLVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGV 141
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
PI+ F++ D V +GV GYK+P+ IQ + + G++++A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/108 (23%), Positives = 49/108 (45%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G +R + + ++ + A+ G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 616 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 759
+++ PTRELA Q QV + G ++ GG ++ L + V
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPV 250
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*LKRVPAK 538
FE+ + G+ G++ P+PIQ + PIA++G+++LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/108 (23%), Positives = 49/108 (45%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G +R + + ++ + A+ G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 616 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 759
+++ PTRELA Q QV + G ++ GG ++ L + V
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPV 250
Score = 35.1 bits (77), Expect = 0.055
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*LKRVPAK 538
FE+ + G+ G++ P+PIQ + PIA++G+++LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 42.3 bits (95), Expect = 4e-04
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Frame = +1
Query: 487 SYVWKEFIGVAQTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 621
+Y K+ IG A+TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 622 LAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE 762
+ PTRELA Q+ + + V+ + GG +Q R L+ E
Sbjct: 285 ITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPE 331
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = +1
Query: 439 NGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 606
+G+ + + L++ K+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 607 PIALVLAPTRELAQQI 654
L+L PTRELA QI
Sbjct: 453 IFVLILCPTRELASQI 468
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Frame = +1
Query: 442 GLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 621
G ++ A + ++ I AQ+G+GKT L ++ + AL+
Sbjct: 54 GFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ-----ALI 108
Query: 622 LAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGV 759
L+PTRELA Q ++ G H + + C+ GG E R LE GV
Sbjct: 109 LSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGV 154
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/108 (23%), Positives = 47/108 (43%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G ++ + + + + A+ G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 616 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 759
++L PTRELA Q QV + ++ GG R+ L + V
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPV 243
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*LKRVPAK 538
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/108 (23%), Positives = 47/108 (43%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G ++ + + + + A+ G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 616 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 759
++L PTRELA Q QV + ++ GG R+ L + V
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPV 243
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*LKRVPAK 538
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1
Query: 517 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 666
AQTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +1
Query: 523 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 663
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +1
Query: 499 KEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 678
K I A GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/108 (23%), Positives = 47/108 (43%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 615
+ G ++ + + + + A+ G+GKT A+ +P + I+ + + + A
Sbjct: 171 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ-----A 225
Query: 616 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 759
++L PTRELA Q QV + + GG R+ L + V
Sbjct: 226 VILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPV 273
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*LKRVPAK 538
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 34.3 bits (75), Expect = 0.096
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +1
Query: 523 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVAADF 675
TGSGKTLAY+LP + I R A+++AP+REL QI ++V
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLL 215
Query: 676 GHTSYVRNTCVFGGAPKREQARDLER 753
G + GGA + Q L++
Sbjct: 216 GPVHRRMVQQLVGGANRMRQEEALKK 241
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 612
D+G + + + + + I A++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 613 ALVLAPTRELAQQI 654
ALVL TRELA QI
Sbjct: 117 ALVLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 436 DNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 612
D+G + + + + + I A++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 613 ALVLAPTRELAQQI 654
ALVL TRELA QI
Sbjct: 117 ALVLCHTRELAYQI 130
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Frame = +1
Query: 433 KDNGLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIVHINN----QPPIRRG 600
+D+G R + + K+ I A+TGSGKT Y+ P I + N R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNRE 155
Query: 601 DGP-----IALVLAPTRELAQQI 654
+ P I+L+L P L +Q+
Sbjct: 156 ERPFPLKNISLILCPNVMLCEQV 178
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 517 AQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 654
A++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 7 AKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 230 ASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 410 PDYVQQGVKTM 442
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 230 ASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 410 PDYVQQGVKTM 442
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At4g27510.1 68417.m03951 expressed protein ; expression supported
by MPSS
Length = 677
Score = 28.7 bits (61), Expect = 4.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 489 LCLERIYWRSSNGFR 533
+C+ER+YW+ N FR
Sbjct: 250 MCVERLYWKKGNAFR 264
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 653 ICCANSLVGAKTKAIGPSPLRI 588
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 14 SKRIHSLNKHLQLNPKI 64
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +2
Query: 272 KNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 451
K D H +L P+E + + H+V + VE ++ E+ F + VQ+ K +G
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 216
Query: 452 EPTPIQAQGWPIAMSGKNLLA*LKRVPAKRW 544
T + Q W +LL + +PA RW
Sbjct: 217 -ATLVICQ-WGFDDEANHLLM-HRNLPAVRW 244
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +2
Query: 272 KNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 451
K D H +L P+E + + H+V + VE ++ E+ F + VQ+ K +G
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 292
Query: 452 EPTPIQAQGWPIAMSGKNLLA*LKRVPAKRW 544
T + Q W +LL + +PA RW
Sbjct: 293 -ATLVICQ-WGFDDEANHLLM-HRNLPAVRW 320
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 442 GLQRTDAYSSSRLADSYVWKEFIGVAQTGSGKTLAYILPAIV 567
G+ ++ L+ K+ + +A TGSGK+L + +PA++
Sbjct: 165 GISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALL 206
>At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative
(FUT2) identical to SP|O81053 Probable
fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2) {Arabidopsis
thaliana}; similar to xyloglucan fucosyltransferase
GI:5231145 from [Arabidopsis thaliana]
Length = 539
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 495 LERIYWRSSNGFRQNVGLHLASHCAHKQ--PTAYSER*WSDCF 617
L+ +YW + R +G+H SH H+Q ++ + W++ +
Sbjct: 404 LKTMYWENPTVTRDVIGIHQPSHEGHQQTEKLMHNRKAWAEMY 446
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 14 SKRIHSLNKHLQLNPKI 64
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,725,135
Number of Sequences: 28952
Number of extensions: 357181
Number of successful extensions: 1214
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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