Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120197.Seq
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)                28   7.0  
SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   9.3  

>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
          Length = 890

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
 Frame = +3

Query: 543 ETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVF-------STLAFIHNRF 701
           +T++  LAL  Y       E+T  LLE+  N+ D   +  + F       S L +   RF
Sbjct: 753 DTVEQSLALHVYGVEEPGTEITVDLLEVLHNRLDDATLEVISFMLARNPGSKLTYADVRF 812

Query: 702 -HPLVTNFTNKMEFVV 746
             PL T+ T  + FV+
Sbjct: 813 IQPLGTSPTVTLRFVI 828


>SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
 Frame = +3

Query: 543 ETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVF-------STLAFIHNRF 701
           +T++  LAL  Y       E+T  LLE+  N+ D   +  + F       S L +   RF
Sbjct: 229 DTVEQSLALHVYGVEEPGTEITVDLLEVLHNRLDDATLEVISFMLARNPGSKLTYADVRF 288

Query: 702 -HPLVTNFTNKMEFVV 746
             PL T+ T  + FV+
Sbjct: 289 IQPLGTSPTVTLRFVI 304


>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = -3

Query: 730 LLVKLVTSGWNLLC-IKANVLNTTAAICRVSALFLNISNSGWVISRVLSIAMYLLSANLI 554
           L+ K VT   NLL  ++ ++L     +  V+  F +I +SG  +  +LS+ M  +   L 
Sbjct: 357 LIRKFVTELLNLLFNVRFSILLPKLMLVVVAFGFYSIHSSGGAMGALLSLMMLTMLRCLP 416

Query: 553 FRVS*LSKLLRFFKSIRPIRRFFG 482
           FR+   + ++ F   +     +FG
Sbjct: 417 FRIRSFNFMIIFSLLMNIANAYFG 440


>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/68 (25%), Positives = 36/68 (52%)
 Frame = +3

Query: 510 DLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFSTLAFI 689
           + KN+SS   Y T K K +L++ +   + + +  PL+E+FR  +   ++  +  +  + +
Sbjct: 275 ETKNMSSF--YWTKKYKKSLARSLREAAVIHLGVPLVELFRYLSGQHRVHCLPSNASSGL 332

Query: 690 HNRFHPLV 713
            +R  P V
Sbjct: 333 ASRPVPFV 340


>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 346 KRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAELI*K 519
           +RY    S +EH S    +D   K KRVK  ++    ++   +EK+++  ++ + I K
Sbjct: 509 ERYDRFMSAFEHVSTK--IDDIYKNKRVKDKELEMENKVWQQEEKLRQLKDIVQNIAK 564


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,604,599
Number of Sequences: 59808
Number of extensions: 354052
Number of successful extensions: 712
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)