Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120196.Seq
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.80 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.80 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.3  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   7.5  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 364 PTPSYIDPGLFFAQPGILC 308
           P PS IDPG      G LC
Sbjct: 153 PNPSIIDPGPALPPAGFLC 171


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 364 PTPSYIDPGLFFAQPGILC 308
           P PS IDPG      G LC
Sbjct: 153 PNPSIIDPGPALPPTGFLC 171


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +1

Query: 511 VWPLWC 528
           +WPLWC
Sbjct: 570 IWPLWC 575


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 549 NTDMEVLESLEYTSDNVELLC 611
           +TD++VL    ++  NV LLC
Sbjct: 234 STDIKVLGYQRHSKQNVALLC 254


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = -3

Query: 462 ICIINVFHVPLFERVRNKQYISRQMHNVKNKLGRRRV 352
           IC   + ++ +F +  N+Q + +++     ++G+R+V
Sbjct: 323 ICYKLLSNLGIFPKTTNEQLLRKELLLFAEQMGQRQV 359


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,901
Number of Sequences: 336
Number of extensions: 4247
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)