Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120196.Seq
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    28   1.1  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   4.6  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    26   4.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.1  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   8.1  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   8.1  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 645 CCNYQLSHILFCITIQRCH*CILNFPTLPCPCFAAD 538
           CCN++  H        + H   +N  TL C C++ D
Sbjct: 109 CCNHESDHSRKHFEKNKKHCVFVNIITLKCHCYSCD 144


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -1

Query: 443 FTSRFLSALGTSNTLAVRCIMLKINSADAELYRPRFI-------FCATRHFVRHTTLFTL 285
           FT  FLS +G SNT+ V+ + L    AD  ++R + +       F   R  + +TT   L
Sbjct: 151 FTKSFLSKIGESNTITVKGMPL----ADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLAL 206

Query: 284 N*DD 273
             DD
Sbjct: 207 EDDD 210


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 503  LQHIAPSITL*FFKYVL*MYFTSRFLSA 420
            L H++P I+   +KY L   F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 604 NSTLSLVYSKLSNTSMSVFCS*FRSNTTTAKQRHCNTS 491
           NST S+    +SN++ S+      + TTTAK   C  S
Sbjct: 84  NSTTSMSGMNMSNSTTSMSGMNMTNTTTTAKASSCKLS 121


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 637  LSTITHTFLHNNSTLSLVYSKLSNTSMSVFC 545
            L T+THT  HN   L    S L  T   ++C
Sbjct: 4029 LPTMTHTLPHNRFRLFFFLSWLHATLAEIYC 4059


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 528 LDRNQLQNTDMEVLESLEYTSDNVE 602
           +D N  +++D++    LEYT+DN E
Sbjct: 8   IDPNSSEDSDIQEDAELEYTADNPE 32


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 565 CWKV*NTLVTTLNCYAKKY 621
           CWK   T+V  L  Y KKY
Sbjct: 491 CWKSAKTIVQLLKIYFKKY 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,418
Number of Sequences: 5004
Number of extensions: 62727
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)