Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120196.Seq
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192...    29   4.8  
04_01_0063 - 630345-633743                                             28   6.4  
07_01_0117 + 894314-896677                                             28   8.4  
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557...    28   8.4  

>01_07_0061 +
           40818077-40818241,40818494-40818716,40819015-40819263,
           40819455-40819505,40819611-40819871,40819994-40820046,
           40820234-40820348,40820475-40820696,40821280-40822253
          Length = 770

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 382 IMHLTA--NVLLVPNA--LKKRDVKYIYNTYLKNYSVIEGAMC 498
           ++HL    NV+  PNA  LKK  V Y+YN   KN+   E   C
Sbjct: 713 VVHLLGETNVVAEPNADFLKKIIVDYVYNFIRKNFRQPEKITC 755


>04_01_0063 - 630345-633743
          Length = 1132

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 20   QVNSLAALEITHCLYTADPSRTVT-GSMNNLRLDCAE 127
            Q+ SL +L+ + C +   P   V   S+ NLRLDC +
Sbjct: 1047 QLTSLTSLDFSCCSWDRLPENLVNLTSLENLRLDCCK 1083


>07_01_0117 + 894314-896677
          Length = 787

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 645 CCNYQLSH-ILFCITIQRCH*CILNFPTLPCPCF 547
           CC   + H +L+C+       C++ +PT+ CPC+
Sbjct: 469 CCYKPVFHFMLYCVR------CMMRWPTICCPCY 496


>03_05_0434 +
           24252994-24253449,24254791-24254877,24255450-24255748,
           24256146-24256383,24256907-24257441,24257527-24257729,
           24258311-24258520
          Length = 675

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 582 ILNFPTLPCPCFAADFGPTPQRPNNAIATHRTFNYTVIFQ-ICIINVFHVP 433
           +L    LPC      FG TP+ P      +RT +  ++ + I I N   +P
Sbjct: 371 LLALTALPCSLLIPFFGTTPESPRYLCGQNRTSDAMLVLERIAITNQAALP 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,494,037
Number of Sequences: 37544
Number of extensions: 377135
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)