Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120196.Seq
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical ...    31   0.61 
Z96047-9|CAB09417.1|  372|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81077-16|CAB03073.1|  372|Caenorhabditis elegans Hypothetical p...    30   1.4  

>AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical
           protein C13A2.9 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 343 GLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTY 462
           GL+   S   IFN   L A++LL+ N +K    K I+N +
Sbjct: 12  GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51


>Z96047-9|CAB09417.1|  372|Caenorhabditis elegans Hypothetical
           protein F36A2.3 protein.
          Length = 372

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +2

Query: 17  WQVNSLAALEITHCLYTADPSRTVTGSMNNLRLDCAET*NLTVALPTR 160
           WQ  S  A ++  C    DP     G  N L+  C ET NL    P+R
Sbjct: 275 WQTTSKTA-DLGQCFVAIDPECFAPGFSNRLQEFCDETRNLNPINPSR 321


>Z81077-16|CAB03073.1|  372|Caenorhabditis elegans Hypothetical
           protein F36A2.3 protein.
          Length = 372

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +2

Query: 17  WQVNSLAALEITHCLYTADPSRTVTGSMNNLRLDCAET*NLTVALPTR 160
           WQ  S  A ++  C    DP     G  N L+  C ET NL    P+R
Sbjct: 275 WQTTSKTA-DLGQCFVAIDPECFAPGFSNRLQEFCDETRNLNPINPSR 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,805,552
Number of Sequences: 27780
Number of extensions: 375222
Number of successful extensions: 903
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)