Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120196.Seq
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23480.2 68414.m02946 glycosyl transferase family 2 protein s...    29   4.0  
At1g23480.1 68414.m02945 glycosyl transferase family 2 protein s...    29   4.0  
At1g75640.1 68414.m08788 leucine-rich repeat family protein / pr...    27   9.3  

>At1g23480.2 68414.m02946 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 484

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = -3

Query: 678 YLFIHNFFGNTCCNYQLSHILFCITIQRCH*CILNFPTLPCPCFAADFGPTPQRPNNAIA 499
           YL  + FF      +  + + +C+ +       + FP L  P +A  + PT     NAIA
Sbjct: 308 YLIYNFFFIRKIVVHIFTFVFYCLILPTT----VLFPELQVPKWATVYFPTTITILNAIA 363

Query: 498 THRTFNYTVIFQICIINV 445
           T R+  + ++F I   NV
Sbjct: 364 TPRSL-HLLVFWILFENV 380


>At1g23480.1 68414.m02945 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 556

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = -3

Query: 678 YLFIHNFFGNTCCNYQLSHILFCITIQRCH*CILNFPTLPCPCFAADFGPTPQRPNNAIA 499
           YL  + FF      +  + + +C+ +       + FP L  P +A  + PT     NAIA
Sbjct: 380 YLIYNFFFIRKIVVHIFTFVFYCLILPTT----VLFPELQVPKWATVYFPTTITILNAIA 435

Query: 498 THRTFNYTVIFQICIINV 445
           T R+  + ++F I   NV
Sbjct: 436 TPRSL-HLLVFWILFENV 452


>At1g75640.1 68414.m08788 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 1140

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 415 PNALKKRDVKYIYNTYLKNYSVIEGAMCCNGVVWPLWCW 531
           PN  ++R  K I    L     +   +CC G V+ LW W
Sbjct: 744 PNVRRRRRRKLILLVTLAVAGALLLLLCCCGYVFSLWKW 782


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,073,975
Number of Sequences: 28952
Number of extensions: 311240
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)