Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120193.Seq
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    30   0.36 
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    29   0.82 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    29   1.1  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    28   1.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   4.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    26   7.6  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.6  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   7.6  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -1

Query: 362  PCLIFVNL*NDPLVFLMIYFFNAQQPGNSFVMKTHLRLEHL-SVITVKWPKLALIYSFIR 186
            P LI ++L    L   +I+FF+   P N+F M+T  +  HL +   +KW  +  + + + 
Sbjct: 993  PALIQLSLDGFRLAMNVIFFFSMDLPRNAF-MQTLTKFTHLNNTSELKWTNMHALKTLLE 1051

Query: 185  SNDTMSNMCAQTSSVFIVCLSVL 117
             +    +    +    ++C+S L
Sbjct: 1052 ISLAHGDKLRDSWKDVLLCISQL 1074


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
 Frame = +2

Query: 722 KKMGKKMADRSTSSLQ-----ATTQQFQRAKKDRLRCLPTQI 832
           KK+G+K +D+  SS +     A  + F++ K+D L+ L TQ+
Sbjct: 67  KKIGRKNSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQV 108


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +1

Query: 493  LGKKELNYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPAMW 663
            L +K+ N   ++  V + + K + +K  V+ N   IL NS   W   IK+P   S P   
Sbjct: 904  LYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSM 962

Query: 664  DLVKNTPELADFV 702
            D   N  +L   +
Sbjct: 963  DFTSNDEQLVQLL 975


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 413 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK 502
           N+++  +L+  +  + N+D L+A VNFL K
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSK 172


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 532  PVMQDERKMSKRKKKVINNNKYILFNSWYTK 624
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 305 NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 472
           ++SS+ +   F    ++    + EQ  S +     K  ++LN L    YN  N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 597 VFIVVNHLLLAFGHFAFVLHDRHYVEDIVKFFFSKKFTIAISWSM 463
           ++I +  L LA G FA++  DR+ V+      FS  F  A+  S+
Sbjct: 102 IWITLLILALAVGGFAYIDVDRNLVQGAAMKIFSFTFQTALPISI 146


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 218 PKLA-LIYSFIRS---NDTMSNMCAQTSSVFIVCLSVLMASLNSACISLRVKQSELHPP 54
           P+LA ++Y FI S   ND+M  + A+   +F  CL ++     +    +RV   ++ PP
Sbjct: 170 PQLASILYQFIFSAPPNDSMRMLQARGIKLFRSCLELIEIYKETKAEHVRVFLEQILPP 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,705,757
Number of Sequences: 5004
Number of extensions: 81616
Number of successful extensions: 256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)