Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120193.Seq
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0617 - 12184745-12185008,12185352-12185451,12186585-121866... 30 2.6
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 30 2.6
03_05_0625 - 26225201-26225879,26226706-26227553 29 3.5
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 29 4.6
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 29 4.6
05_03_0669 + 16802158-16802495,16802574-16803906,16803970-16804818 29 4.6
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 4.6
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 29 4.6
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 29 4.6
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 29 4.6
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678 29 4.6
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490... 29 6.1
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206 28 8.1
05_03_0294 + 11818391-11820268,11820332-11820550,11820752-118216... 28 8.1
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471 28 8.1
>02_02_0617 -
12184745-12185008,12185352-12185451,12186585-12186653,
12187988-12188037
Length = 160
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 37 KNCTHLGGCNSDCLTRSEIQALFREAINTLKHTMNTEDVCAHMLDI 174
++C HL G + + L E+Q L ++ NT KH + +D HML +
Sbjct: 38 RHC-HLMGEDLESLNLKELQQLEKQLKNTSKHIRSRKDEEKHMLAV 82
>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 199 YIRANLGHFTVITDKCSKRRCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGA 378
++ A G+ + + + + FIT C+ + +KN +FQR T+I G G
Sbjct: 911 FLDAYSGYHQICMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGR 970
Query: 379 TI 384
+
Sbjct: 971 NV 972
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 105 EQRLYFASGQAVRITPA*VRAIFGGHRC 22
E+R + G+A R T A +R F GH+C
Sbjct: 236 EERTFHRQGEAARTTIADMRMDFSGHKC 263
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 199 YIRANLGHFTVITDKCSKRRCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGA 378
++ A G+ + + + + FIT C+ + +KN +FQR T+I G G
Sbjct: 791 FLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGNQLGR 850
Query: 379 TI 384
+
Sbjct: 851 NV 852
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 199 YIRANLGHFTVITDKCSKRRCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGA 378
++ A G+ + + + + FIT C+ + +KN +FQR T+I G G
Sbjct: 654 FLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGR 713
Query: 379 TI 384
+
Sbjct: 714 NV 715
>05_03_0669 + 16802158-16802495,16802574-16803906,16803970-16804818
Length = 839
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 199 YIRANLGHFTVITDKCSKRRCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGA 378
++ A G+ + + + + FIT C+ + +KN +FQR T+I G G
Sbjct: 688 FLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGR 747
Query: 379 TI 384
+
Sbjct: 748 NV 749
>04_04_1405 -
33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 199 YIRANLGHFTVITDKCSKRRCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGA 378
++ A G+ + + + + FIT C+ + +KN +FQR T+I G G
Sbjct: 700 FLDAYSGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGR 759
Query: 379 TI 384
+
Sbjct: 760 NV 761
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 199 YIRANLGHFTVITDKCSKRRCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGA 378
++ A G+ + + + + FIT C+ + +KN +FQR T+I G G
Sbjct: 548 FLDAYSGYHQIRMAREDEEKTAFITPVGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGR 607
Query: 379 TI 384
+
Sbjct: 608 NV 609
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 199 YIRANLGHFTVITDKCSKRRCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGA 378
++ A G+ + + + + FIT C+ + +KN +FQR T+I G G
Sbjct: 902 FLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGR 961
Query: 379 TI 384
+
Sbjct: 962 NV 963
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 199 YIRANLGHFTVITDKCSKRRCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGA 378
++ A G+ + + + + FIT C+ + +KN +FQR T+I G G
Sbjct: 919 FLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGR 978
Query: 379 TI 384
+
Sbjct: 979 NV 980
>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
Length = 261
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 568 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 702
+ I+ N Y+ +W T+ QP S W L K + A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177
>01_06_0717 -
31446860-31447074,31447183-31447270,31448909-31449012,
31449618-31449745,31450461-31450555,31461823-31463115,
31463188-31464039,31464568-31464621
Length = 942
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +1
Query: 199 YIRANLGHFTVITDKCSKRRCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGA 378
++ A G+ + + + + FIT C+ + +KN +FQR T+I G G
Sbjct: 433 FLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNARPTFQRTTRISLGSQLGR 492
Query: 379 TI 384
+
Sbjct: 493 NV 494
>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
Length = 961
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 250 KRRCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 384
+ + FIT C+ + +KN +FQR T+I G G +
Sbjct: 801 EEKTAFITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845
>05_03_0294 +
11818391-11820268,11820332-11820550,11820752-11821644,
11829889-11829905,11829927-11830183
Length = 1087
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 250 KRRCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 384
+++ FIT C+ + +KN +FQR T+I G G +
Sbjct: 707 EKKSAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 751
>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
Length = 331
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 616 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 726
+ + +PEWPSS A+ N PEL V + D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,753,721
Number of Sequences: 37544
Number of extensions: 506608
Number of successful extensions: 1329
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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