BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120193.Seq (839 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28) 35 0.094 SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 31 1.5 SB_3362| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_48668| Best HMM Match : WXG100 (HMM E-Value=2.8) 29 6.2 SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54) 29 6.2 >SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28) Length = 580 Score = 34.7 bits (76), Expect = 0.094 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Frame = -1 Query: 185 SNDTMSNMCAQTSSVFIVCL----SVLMASLNSACISLRVKQSELHPPKCVQFLGGIVVV 18 S T SN+ Q + F+ CL + L A +++ C+ ++ + PP +L G+ ++ Sbjct: 272 STGTYSNLKTQFKAFFLFCLYFDLTPLPADIDTVCLYVQFLSRSIAPPSIRNYLNGVKLL 331 Query: 17 YLF 9 +LF Sbjct: 332 HLF 334 >SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) Length = 139 Score = 30.7 bits (66), Expect = 1.5 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +1 Query: 529 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 630 +PV +++ + K NN KY L WY+K++ Sbjct: 7 LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40 >SB_3362| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 352 Score = 29.5 bits (63), Expect = 3.6 Identities = 23/90 (25%), Positives = 45/90 (50%) Frame = +1 Query: 562 KRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKDG*KN 741 KRKK V+ N ++F ++ PE V +TPE ++ V++F+ EKD N Sbjct: 80 KRKKCVLRNGDVVVFGG--AGVQTPE--------GRVVSTPE-SELVYVFECDEKDDKNN 128 Query: 742 GRPIDIVSSSDNAAIPASQKRQTAVLTNAN 831 G D+ + + + ++++ +V+ + N Sbjct: 129 GSVKDVCTPKE---VCTPRRKRPSVIKSEN 155 >SB_48668| Best HMM Match : WXG100 (HMM E-Value=2.8) Length = 214 Score = 28.7 bits (61), Expect = 6.2 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = +1 Query: 451 QQIQHGPANCYCKFLGK--KELNYILNVMPVMQDERKMSKRKKK 576 ++I+ + C K LGK KE+ LN ++DE K +K K K Sbjct: 145 RKIEDQDSECISKQLGKQIKEIEKALNNREALEDELKQTKSKLK 188 >SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54) Length = 710 Score = 28.7 bits (61), Expect = 6.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 442 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 359 RF Q I+AH SF +R+LLR + H Sbjct: 22 RFPRNPQKLIYAHQNSFKKRILLRRIEH 49 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 28,062,524 Number of Sequences: 59808 Number of extensions: 625757 Number of successful extensions: 1659 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1564 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1657 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2371447782 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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