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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120193.Seq
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)          35   0.094
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)                       31   1.5  
SB_3362| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_48668| Best HMM Match : WXG100 (HMM E-Value=2.8)                    29   6.2  
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)               29   6.2  

>SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)
          Length = 580

 Score = 34.7 bits (76), Expect = 0.094
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -1

Query: 185 SNDTMSNMCAQTSSVFIVCL----SVLMASLNSACISLRVKQSELHPPKCVQFLGGIVVV 18
           S  T SN+  Q  + F+ CL    + L A +++ C+ ++     + PP    +L G+ ++
Sbjct: 272 STGTYSNLKTQFKAFFLFCLYFDLTPLPADIDTVCLYVQFLSRSIAPPSIRNYLNGVKLL 331

Query: 17  YLF 9
           +LF
Sbjct: 332 HLF 334


>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
          Length = 139

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 529 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 630
           +PV    +++   + K  NN KY L   WY+K++
Sbjct: 7   LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40


>SB_3362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/90 (25%), Positives = 45/90 (50%)
 Frame = +1

Query: 562 KRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKDG*KN 741
           KRKK V+ N   ++F      ++ PE          V +TPE ++ V++F+  EKD   N
Sbjct: 80  KRKKCVLRNGDVVVFGG--AGVQTPE--------GRVVSTPE-SELVYVFECDEKDDKNN 128

Query: 742 GRPIDIVSSSDNAAIPASQKRQTAVLTNAN 831
           G   D+ +  +   +   ++++ +V+ + N
Sbjct: 129 GSVKDVCTPKE---VCTPRRKRPSVIKSEN 155


>SB_48668| Best HMM Match : WXG100 (HMM E-Value=2.8)
          Length = 214

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 451 QQIQHGPANCYCKFLGK--KELNYILNVMPVMQDERKMSKRKKK 576
           ++I+   + C  K LGK  KE+   LN    ++DE K +K K K
Sbjct: 145 RKIEDQDSECISKQLGKQIKEIEKALNNREALEDELKQTKSKLK 188


>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
          Length = 710

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 442 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 359
           RF    Q  I+AH  SF +R+LLR + H
Sbjct: 22  RFPRNPQKLIYAHQNSFKKRILLRRIEH 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,062,524
Number of Sequences: 59808
Number of extensions: 625757
Number of successful extensions: 1659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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