Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120193.Seq
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024839-1|AAF60832.2|  232|Caenorhabditis elegans Thaumatin fam...    32   0.58 
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA ...    30   2.4  
AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line hel...    30   2.4  
Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine re...    29   4.1  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>AC024839-1|AAF60832.2|  232|Caenorhabditis elegans Thaumatin family
           protein 5 protein.
          Length = 232

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 387 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDTPSLRTFVGNY 229
           ++CC G F   D C+   R A +  D    CPTA+ +  D+ T +      NY
Sbjct: 179 QECCRGAFGTPDKCRQ-SRTAMLFKDA---CPTAYSYAYDDATSTFTCKNANY 227


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +2

Query: 350 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNLTISST* 529
           K N+    EQ   TE  A+ +N+KLL  L   + ++  MDQ +   N ++K  +    T 
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELT- 178

Query: 530 CLSCRTNAKCPNARRR 577
             SC+   K     RR
Sbjct: 179 --SCQNRFKQMKQERR 192


>AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA
           helicase-3 protein.
          Length = 720

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +2

Query: 347 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNLTISST 526
           +    ++  + Q STE  +    E+  +    SSY     D+       LE K   IS+T
Sbjct: 144 ENEGSIHRSDDQVSTENCSAKDEERDRDSGGVSSYGNKRSDEFCGTSPILEAKGFGISNT 203

Query: 527 *CLSCR 544
            C +C+
Sbjct: 204 -CFNCK 208


>AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line
           helicase protein 3 protein.
          Length = 720

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +2

Query: 347 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNLTISST 526
           +    ++  + Q STE  +    E+  +    SSY     D+       LE K   IS+T
Sbjct: 144 ENEGSIHRSDDQVSTENCSAKDEERDRDSGGVSSYGNKRSDEFCGTSPILEAKGFGISNT 203

Query: 527 *CLSCR 544
            C +C+
Sbjct: 204 -CFNCK 208


>Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical
           protein VZK822L.2 protein.
          Length = 83

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 122 VLMASLNSACISLRVKQSELHPPKCVQFLGGIVVVYL 12
           +L+  ++  CI + + QS L PP+C     G +++ L
Sbjct: 13  LLVGGMSIVCILIHIIQSTLRPPQCCHNSSGTLIIGL 49


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 651 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 526
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 59 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = -1

Query: 356 LIFVNL*NDPLVFLMIYFFNAQQPGNSFVMKTHLRLEHLSV----ITVKWPKLALIYSFI 189
           L++VN  N   +F  IYF      G + V+    +L+ +++    I+ K  +LAL+Y F+
Sbjct: 180 LVYVNAININAIFSSIYFILILTIGIATVVLVTKKLKAVNLPTDRISKKLTRLALVYCFL 239

Query: 188 RSNDTMSNMCAQTSSVF 138
            +   + ++ A   S F
Sbjct: 240 YTGILLWSVIASIDSSF 256


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 520  LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 681
            ++++P M    K S  K++     +Y   +  ++ +K KQ E  + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,920,275
Number of Sequences: 27780
Number of extensions: 474488
Number of successful extensions: 1385
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)