Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120193.Seq
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36550.1 68417.m05190 U-box domain-containing protein low sim...    29   3.8  
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    29   5.1  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    29   5.1  
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    28   6.7  
At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    28   6.7  
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    28   8.9  
At2g02340.1 68415.m00172 F-box family protein / SKP1 interacting...    28   8.9  

>At4g36550.1 68417.m05190 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 577

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +1

Query: 34  PKNCTHLGGCNSDC-LTRSEIQALFREAINTLKHTMNTEDVCAHMLDIVSFERIKEYIRA 210
           P   T  G  +S   +  S+ + L  +A+ TLK+  ++ ++C  M+ +   +++  +++ 
Sbjct: 355 PSKITSSGSLSSLLKIVESQAEHLQEQAMITLKNLSSSMEICLEMVSLDFIQKLTSFLQQ 414

Query: 211 NL---GHFTVITDKCSKRRCVFITNELPGCWA 297
            +       ++ + CS  +      E P C A
Sbjct: 415 KVFCKHSIIILKNLCSTEKGRGCITETPDCLA 446


>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 625 IKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKDG*KNGR 747
           IK   WP +   W+ ++N   +AD +  F+ + K G K GR
Sbjct: 127 IKWRGWPETANTWEPLENLQSIADVIDAFEGSLKPG-KPGR 166


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 387 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDTPSLRTFVGNY 229
           E CC+G F   D C+P +        +FF   CPTA+ +  D+ T +      +Y
Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGTSTFTCSGADY 243


>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 387 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 259
           E CCSG F   D CKP +      +     CP A+ +  D+ T
Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234


>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 387 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDTPSLRTFVGNY 229
           E CC+G F+  + C P K            CPTA+ +V D  +        NY
Sbjct: 139 EYCCTGAFSKPETCPPTKYSKIFKGA----CPTAYSYVYDYASSRFTCTSANY 187


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 584 TTINTFCLTVGTLRSSSPSGLVA 652
           T++ + CLT+GTL    PSG+ A
Sbjct: 287 TSVLSICLTIGTLHYVIPSGVAA 309


>At2g02340.1 68415.m00172 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 305

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +1

Query: 487 KFLGKKELNYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMW 663
           KFL KKEL + L    V+ D+ K S   +K  N  + I+ ++    I    W +SP  W
Sbjct: 95  KFLSKKELYFALCDKSVLIDDGKKSLWIEKA-NAKRCIMISAMNLAI---AWGNSPQSW 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,341,774
Number of Sequences: 28952
Number of extensions: 420034
Number of successful extensions: 1165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)