Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120192.Seq
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    31   0.18 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.3  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    27   3.0  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    27   3.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   5.2  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   6.9  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   9.1  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    25   9.1  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = -1

Query: 255 KSYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTFNRL 76
           K+ ++ R  LL   +L P  T  S++   +A   + N L  C+  K    ++L    ++L
Sbjct: 734 KNSSIIRHALLAKLVLFPENTADSLNEVLAA---YKNTLDLCSQDKRKQSSVLKINLSKL 790

Query: 75  FSSDSTDSLLCPKLGDASVKE 13
           F+  S  SL   +LG   V +
Sbjct: 791 FTLHSCLSLALQRLGYGDVSK 811


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 481  RAPLVRTAAPCWGRSSTQSCCRLRIATCHCPL 386
            +AP V + + C   S ++SCC LR      P+
Sbjct: 1787 KAPFVNSTSICTAVSESRSCCHLRYLNGAAPV 1818


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -1

Query: 222 VPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF---NRLFSSDSTDS 52
           +P  L P   +S+I     +  +W+ +LS  +      R  ++FT     +  + DS  S
Sbjct: 318 LPISLNPDFLISNIHKVSESPRVWVTILSSLSRSCQKFRKKIAFTLFVGKQSKNDDSDFS 377

Query: 51  LLCPKLGDAS 22
            LC +L + S
Sbjct: 378 SLCQRLDEIS 387


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 456 PRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKH 346
           P + ++Q ++HAVD+ S   ++    +G   F  N H
Sbjct: 258 PEILLEQPYDHAVDWWSMGILIFDLLTGSPPFTANNH 294


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 340 KSMFI--VFKGITPTKTVEDNGMLRFEVDSMIVCLIDPN 450
           K+M+I  V + ITP   +++N M  +E + ++  + DPN
Sbjct: 156 KNMYIRSVTRVITPGTLIDENFMNPYESNYILTVVFDPN 194


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 253 LGVKSPNAASTSSNVTMTRGTANFDIKEFK 342
           L   +P AA+ SSNVTM   T+  +   F+
Sbjct: 781 LNANTPKAAAPSSNVTMKNVTSILETSTFE 810


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 240 PRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAM-RKL 115
           P + ++ PT++E +  ++  D  +S    W N  SP ++ RKL
Sbjct: 514 PNREIIQPTIVESTSFLAWKDEAYSLGMEWANAYSPDSISRKL 556


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 14  SLTEASPSLGQSSESVESDENKRLNVKLN--NARVANLRIAHGDNKLSQ 154
           SLT+A  SL + S+SVE  +  +L+ +L+    ++AN R   G   L Q
Sbjct: 16  SLTDAIDSLDKRSDSVEV-KIAKLDAQLSVFQQKIANTRPGPGQTALKQ 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,060
Number of Sequences: 5004
Number of extensions: 65994
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)