Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120192.Seq
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0159 - 1116786-1117153,1117251-1119936                           31   1.0  
07_01_0758 - 5833016-5833234,5833324-5833839,5833940-5833960,583...    29   3.1  
11_06_0351 - 22577666-22577989,22578282-22578676,22578961-225793...    28   7.2  
09_02_0060 + 3729613-3729863,3730377-3730392                           28   7.2  
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774...    28   7.2  
02_02_0637 - 12491706-12492575,12492580-12492657                       28   7.2  
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773           28   9.5  

>07_01_0159 - 1116786-1117153,1117251-1119936
          Length = 1017

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 512 VPRVQLDLRNSRTSRSDSGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPLNTINM-DLN 336
           +P   ++    RT       ++G I   I L ++ RNM L S  L G+IP    N+  LN
Sbjct: 143 IPEALINCTRLRTLDVSRNHLVGDITPNIALLSNLRNMRLHSNNLTGIIPPEIGNITSLN 202

Query: 335 SLI 327
           ++I
Sbjct: 203 TVI 205


>07_01_0758 -
           5833016-5833234,5833324-5833839,5833940-5833960,
           5834062-5834232,5834318-5834449,5834534-5834743
          Length = 422

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 468 TRGARIAQIQLHSGYTKNEAAQQVLLENNFTAINADQ 578
           T GARI   Q   GY KN   Q +++EN +  I  DQ
Sbjct: 302 TNGARIKTWQGGWGYAKNIVFQNMIMENVWNPIIIDQ 338


>11_06_0351 -
           22577666-22577989,22578282-22578676,22578961-22579308,
           22579449-22579583,22579664-22579731,22579804-22579869,
           22579970-22580041,22580143-22580286,22580392-22580463,
           22580805-22580872
          Length = 563

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
 Frame = -2

Query: 587 IGGLVSINSGKVIFQ*NLL---SCLVFRVPRVQLDLRNSRTSRSDSGPVLGSIKHTIMLS 417
           + G +S + GK+++   LL   + +   +P+   +L +  T +     + GSI  ++   
Sbjct: 30  LSGFLSPSIGKLLYLQQLLLNDNNITGGIPQELGNLSSLTTLKLGGNSLNGSIPDSLGRL 89

Query: 416 TSNRNMPLSSTVLVGVIPLNTINM-DLNSL 330
           +  +N+ +S  +L+G IP +  N+  LN +
Sbjct: 90  SKLQNLDMSKNLLIGNIPTSLSNLSSLNDI 119


>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 122 ANWPPGRY*ALRLIVCSRLIPPIRC 48
           A WPP RY + R   C R +P + C
Sbjct: 35  AKWPPSRYRSYR-ATCCRAVPSLLC 58


>02_05_0642 +
          30576158-30576289,30576436-30576503,30577167-30577487,
          30578318-30579146
          Length = 449

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 77 CSRLIPPIRC-SALNWATPRLR 15
          CS  +PP+RC   L W+ PR++
Sbjct: 23 CSSRLPPLRCFVGLRWSAPRIQ 44


>02_02_0637 - 12491706-12492575,12492580-12492657
          Length = 315

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -3

Query: 568 LIAVKLFSNKTC*AASFFVYPECSWICAIR-APLVRTAAPCWGRSSTQSCCRLRIATCHC 392
           LI   L    TC A      P  SWIC    +P  R+  P   RSS +S  R   +T H 
Sbjct: 74  LILYNLLLCSTCRAGCSASPPASSWICGTEGSPPTRSRTP---RSSRRSPAR-ATSTTHS 129

Query: 391 PLQF*W 374
           P    W
Sbjct: 130 PFCHSW 135


>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
          Length = 944

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +2

Query: 2   LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 181
           ++ + L +    LG   E  + DE  RL   + +   A+  +  GDN    M+ ++  + 
Sbjct: 450 ISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVR 509

Query: 182 IDDIVKEGS 208
           + D+V++ +
Sbjct: 510 LHDVVRDAA 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,518,917
Number of Sequences: 37544
Number of extensions: 411508
Number of successful extensions: 1079
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)