Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120192.Seq
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)                   31   1.4  
SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)                 30   2.4  
SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07)         29   3.2  
SB_52182| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=1.9)             29   4.2  
SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_47134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)              29   5.5  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   28   9.6  
SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)
          Length = 566

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = +1

Query: 511 TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 639
           T+K + L+K    +T  LL LTK P+S   K ++ T+K ++ TKK+
Sbjct: 384 TKKLQSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKL 429



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
 Frame = +1

Query: 487 RKSNCTL--GTRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 639
           R +N TL   T+K   L+K    +T  LL LTK P+S   K ++ T+K ++ TKK+
Sbjct: 23  RWTNSTLVHHTKKPLSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKL 78



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = +1

Query: 469 REVRELRKSNCTLGTRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 639
           +++  L K   +L T+K   L+K    +T  LL LTK P+S   K ++ T+K ++ TKK+
Sbjct: 399 KKLLSLTKKPLSL-TKKLLSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKL 457



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +1

Query: 469 REVRELRKSNCTLGTRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 639
           ++++ L K   +L       L+K    +T  LL LTK P+S   K ++ T+K ++ TKK+
Sbjct: 300 KKLQSLTKKLQSLTKXXXXSLTKKLQSLTKKLLSLTKKPLSLTKKPLSLTKKLLSLTKKL 359


>SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)
          Length = 1068

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 555  SYFPIKLAE-LPRFSCTQSAVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQH 400
            +YF IK+ E LP+ SCT +  G  Q   +S  Q+   GV Q+     DF   H
Sbjct: 878  TYFVIKILEFLPKNSCTTTCAGGQQTRTVSCKQKDLNGVYQS---LADFHCHH 927


>SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07)
          Length = 729

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = -2

Query: 500 QLDL-RNSRTSRSDSGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPLNTINMDLNSLI- 327
           QL L +NSR   S   P+L  ++  ++  T  + + +    ++   PL T++ D+  L  
Sbjct: 551 QLPLPKNSRGEVSGREPLLKVLRRALLKFTELQTLLIQIEAVIDSRPLTTVSDDVRDLSP 610

Query: 326 ---SKFAVPRVMVTLLDV 282
              +  A+ R  VTL DV
Sbjct: 611 ITPAHLAIRRAFVTLPDV 628


>SB_52182| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=1.9)
          Length = 149

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 361 KGITPTKTVEDNGMLRFEVDSMIVCLIDPNTGPLSERE 474
           +G+TPT+  ED  + R +  S++  +  P T PLSE+E
Sbjct: 32  EGVTPTELSEDLSLSREDALSILQVVRKPQT-PLSEKE 68


>SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +2

Query: 2   LNLNSLTEASPSLGQSSESVESDENKRLNVKLNN----ARVANLRIAHGDNKLSQMYIAE 169
           L L  L E  P+L ++    +SD+  +  ++L N     R    R+  GD    Q+ +AE
Sbjct: 78  LGLQFLREEYPNLDENLIRFQSDQRGKTLIQLRNLGKGGRCKAGRVQAGDGVSCQLSVAE 137

Query: 170 KPLSIDDIVKEGSNKV 217
               ID +++E + +V
Sbjct: 138 ----IDAVIQENTERV 149


>SB_47134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -2

Query: 533 LSCLVFRVPRVQLDLRNSRTSRSDS-GPVLGSIKH---TIMLS 417
           +  L   V ++Q+DL+N RTSR ++   V G + H   TI LS
Sbjct: 239 IEALELEVSKLQVDLQNERTSRKETESRVNGDVNHNDSTISLS 281


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +2

Query: 41   GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 211
            G  SE++    +K ++   +NA+   L  AHG   LS+  + E  L+  D V  GS+
Sbjct: 833  GIQSENMRKLRSKAVDKATSNAKENALNAAHGAKALSEELLFEITLATVDQVVVGSD 889


>SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)
          Length = 246

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 41  GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 211
           G  SE++    +K  +    NA+   L  AHG   LS+  + E  L+  D+V  GS+
Sbjct: 125 GIQSENMRKLRSKAGDKATGNAKENALNAAHGAKALSEALLFEITLATVDLVVVGSD 181


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 521  VFRVPRVQLDLRNSRTSRSDSGPVLGSIKHTIMLSTSN-RNMPLSSTVLV 375
            V R PR+ L LR + T     G +  S+KH I  + ++ +N P+S++ +V
Sbjct: 876  VGRTPRIFLRLRLALTWSQFCGKLEDSLKHQIAKNVADKKNNPISASRIV 925


>SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
 Frame = -1

Query: 474 LSFGQRPRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFKFLDIKVCGAARHGH 295
           + F ++P +GVD    +     ++  + +Y+FSG+  F   + G   L +K+        
Sbjct: 105 IEFEEKPTLGVDAPDPYLPKITTKRLLNVYAFSGK-IFSVKEKG---LYVKL-------- 152

Query: 294 ITRCAGRVWRFNSKSYTV----PRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCA 127
           I   A R++R  +  +T+      +M L  TL E    +++  SG   I +      P +
Sbjct: 153 IHPRASRLFRKKNPCFTIHCKHTERMRLFETLAEYYRIVTTESSGMKDICLTGKRTDPHS 212

Query: 126 MRKLATRALLSFTFNRLFSSDSTDSLLCPKL 34
            R+       S + + L S+ ST SL  PK+
Sbjct: 213 DRRTFPNIPHSSSDDNLPSNSSTKSL--PKI 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,979,329
Number of Sequences: 59808
Number of extensions: 505410
Number of successful extensions: 1545
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)