Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120192.Seq
         (774 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    24   4.5  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   6.0  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   6.0  

>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 153 WLNLLSPCAMRKLATRALLSFTFNRLFSSDSTDSLLCPK 37
           WL   S  A++K A+   +S  F+R+   D      CP+
Sbjct: 100 WLVTASQSALQKFASTDWMSNPFDRVVCGDFAGPNGCPR 138


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 396 WHVAIRSRQHDCVLDRPQHGAAVR 467
           WH A+ +R+   +L R Q  AA+R
Sbjct: 809 WHGALTNRECRSLLKRVQRKAAIR 832



 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 502 CSWICAIRAPLVRTAAPCWGRSSTQSCCR 416
           C  + A+    +R AAP W  + T   CR
Sbjct: 791 CRLLAAVADSTMRYAAPVWHGALTNRECR 819


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 493 ICAIRAPLVRTAAPCWGRSSTQSCCR 416
           + A+ A ++R  AP W  ++    CR
Sbjct: 789 LAAVAASIIRYGAPVWTEATDLQWCR 814


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 787,551
Number of Sequences: 2352
Number of extensions: 17276
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80665782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)