Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120192.Seq
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical pr...    33   0.30 
AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical ...    31   0.69 
Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical p...    31   0.91 
AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical...    31   0.91 
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF031841-1|AAC13677.1|  601|Caenorhabditis elegans GLY7 protein.       28   6.4  
AC006774-7|AAF60620.1|  601|Caenorhabditis elegans Glycosylation...    28   6.4  

>U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical
           protein T14B4.3 protein.
          Length = 296

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -1

Query: 501 AVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFKFLD 328
           +V    F   +FG    VG  QA      F+   A+++    G   F+Y+ H F F D
Sbjct: 38  SVSLLNFNKNAFGLGAAVGAHQAIGDEKLFQKPKALLIIVIDGLENFDYDGHAFNFTD 95


>AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical
           protein M04G7.2 protein.
          Length = 550

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +2

Query: 17  LTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMY-IAEKPLSIDDI 193
           LT  SPS  ++S+S+E + ++  N  ++ A     R A+   KL + + ++ + +++DD 
Sbjct: 209 LTADSPSSRRTSKSLEENSSETTNDSISLADDEETREAY--RKLFKDFAMSSQKMTLDDF 266

Query: 194 VKEGSNKVGTNSIFLGTVYDLELNRQ 271
            +E SN  G     L TV++  +N +
Sbjct: 267 KQEFSNLPGDPPSDLCTVFNHPVNNK 292


>Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -1

Query: 270 WRFNSKSYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSF 91
           WR   KS+++ + M+  P+L      ++S+      +    NL  P  +RKL+ R ++S 
Sbjct: 399 WR-TQKSFSIAKLMIWFPSLAVSEWKLTSLPGILDEMTAAFNLFKPGNLRKLSLRRVVSV 457

Query: 90  TFNRL 76
               L
Sbjct: 458 NIKSL 462


>AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -1

Query: 270 WRFNSKSYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSF 91
           WR   KS+++ + M+  P+L      ++S+      +    NL  P  +RKL+ R ++S 
Sbjct: 399 WR-TQKSFSIAKLMIWFPSLAVSEWKLTSLPGILDEMTAAFNLFKPGNLRKLSLRRVVSV 457

Query: 90  TFNRL 76
               L
Sbjct: 458 NIKSL 462


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -1

Query: 249 YTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLN-LLSPCAMRKLATRALLSFTFNRLF 73
           Y + + + +  T+ E ++  SS++ GF  +Y +LN ++S   +     R  + F  NRL 
Sbjct: 275 YLLSQSLQVFLTVWE-TINRSSLEDGFPTMYSYLNDIVSIFTLLASCLRFPIYFCCNRLI 333

Query: 72  SSDSTDSL 49
            + S D+L
Sbjct: 334 HTASVDTL 341


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
 Frame = +1

Query: 169 KTAIYRRHSQRGLQQSGH*QHFSGHRIRLGVKSPNA-------ASTSSNVTMTRGTANFD 327
           K A  RR S      SGH   FS     +   SP         A+TS+NVT  + T NFD
Sbjct: 90  KHAPDRRSSFLKRSASGHESPFSHPNADVSPSSPQQLHLAFANATTSTNVTNAKSTTNFD 149

Query: 328 --IKEFKSMFIVFKGIT 372
             +K    +  V  GIT
Sbjct: 150 GYLKHISVIAHVANGIT 166


>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 5   NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRIAHGDNKLSQMY 160
           N N++ E  P+  QSS   E+D++ R  V+ LNN  +A  ++  G   L++ Y
Sbjct: 17  NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL--GIEGLAKQY 67


>Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical
           protein K05D4.8 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 636 SLFIYYLLTYKIWYTSVQIVSVQRHCHVIKHI-CSFIVII-FKFIF 767
           S   Y  L   IW TS  + S Q H  +  HI C F++II  KFI+
Sbjct: 196 SALAYIPLILNIWKTSKHLKSAQLH-KLQNHIMCQFLLIIASKFIY 240


>AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical
           protein F52F10.3 protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 630 KKSLFIYYLLTYKIWYTSVQIVSVQRH 710
           +K++FI  +LT+ +W  +  I+SV+ H
Sbjct: 207 EKNIFIKIILTFSLWTNAELILSVKEH 233


>AF031841-1|AAC13677.1|  601|Caenorhabditis elegans GLY7 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 702 QRHCHVIKHICSFIVIIFKFIFN 770
           QR C V  +IC  ++++F F++N
Sbjct: 16  QRGCRVATYICLGVLVLFGFVYN 38


>AC006774-7|AAF60620.1|  601|Caenorhabditis elegans Glycosylation
           related protein 7 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 702 QRHCHVIKHICSFIVIIFKFIFN 770
           QR C V  +IC  ++++F F++N
Sbjct: 16  QRGCRVATYICLGVLVLFGFVYN 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,082,470
Number of Sequences: 27780
Number of extensions: 370100
Number of successful extensions: 1110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)