Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120192.Seq
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.19 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.19 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.78 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.78 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   0.78 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 497 LDLRNSRTSRSDSGPVLGSIK-HTIMLSTSNRNMPLSSTVLVGVIPLNTINMDLNSLIS 324
           LDLRN+   R +S   L     HT+ LS  N+   + + +  G+  LN + +  N++ S
Sbjct: 364 LDLRNNSIDRIESNAFLPLYNLHTLELS-DNKLRTVGAQLFNGLFVLNRLTLSGNAIAS 421


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 384 CRGQWHVAIRSRQHDCVLDRPQHGA--AVRTRGARIAQI 494
           C G + V + S +    LD P H A  ++R RGA I  I
Sbjct: 181 CIGAFDVTLESGERVTFLDTPGHAAFISMRHRGAHITDI 219


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 143 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 253
           K  Q  +  KP +   +V    N  G   IFLG  YD
Sbjct: 487 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 523


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 143 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 253
           K  Q  +  KP +   +V    N  G   IFLG  YD
Sbjct: 487 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 523


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 143 KLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYD 253
           K  Q  +  KP +   +V    N  G   IFLG  YD
Sbjct: 113 KARQYRLNHKPFTYHIVVNSDKNVKGMVRIFLGPKYD 149


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 265 SPNAASTSSNVTMTRGTAN 321
           S  A+ TSS V +TRGT N
Sbjct: 12  SSAASKTSSKVMLTRGTVN 30


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
 Frame = -3

Query: 577 WSALIAVKLFSN--KTC*AASFFVYPECSWICAIRAPLVRTAAPCWGRSSTQSCCRLRIA 404
           W     V L+S     C      V+   +W+  I + +      CW R   ++  R+  A
Sbjct: 348 WLPFFVVNLWSGFCSQCIWQEKIVFAAVTWLGWINSGMNPVIYACWSRDFRRAFVRILCA 407

Query: 403 TC 398
            C
Sbjct: 408 CC 409


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 377 VGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAF-GDL 261
           +G +P+N IN+ L   I       ++ +LL ++ A+ GD+
Sbjct: 72  IGSVPVNNINLILLQNIIDICWITMVYSLLGIIIAYTGDV 111


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 8   LNSLTEASPSLGQSSESVESDENK----RLNVKLNNARVANLR 124
           ++SL E       SS SVE  EN+     LN +  + R+ +LR
Sbjct: 326 ISSLDEIRTRYKDSSSSVEGWENRATIPELNEEFRDLRLQDLR 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,982
Number of Sequences: 438
Number of extensions: 4755
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)