Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120192.Seq
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28310.2 68415.m03438 expressed protein contains Pfam profile...    29   4.5  
At2g28310.1 68415.m03437 expressed protein contains Pfam profile...    29   4.5  
At5g37050.1 68418.m04444 hypothetical protein hypothetical prote...    28   6.0  
At5g23890.1 68418.m02806 expressed protein weak similarity to SP...    28   7.9  

>At2g28310.2 68415.m03438 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 374

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 413 SNRNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP 255
           +N N  +  T ++G++    I + L SL  K  +P  +++ LDV A  GD +P
Sbjct: 13  TNENAKVIITTILGIVFGTFIGITLPSLSFKINLPSRLISSLDV-AISGDKSP 64


>At2g28310.1 68415.m03437 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 374

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 413 SNRNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP 255
           +N N  +  T ++G++    I + L SL  K  +P  +++ LDV A  GD +P
Sbjct: 13  TNENAKVIITTILGIVFGTFIGITLPSLSFKINLPSRLISSLDV-AISGDKSP 64


>At5g37050.1 68418.m04444 hypothetical protein hypothetical protein
           T28J14.60 - Arabidopsis thaliana, PIR:T48483
          Length = 165

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -2

Query: 482 SRTSRSDSGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPL 360
           SRT R+ +GP + S     ML+T+N +  ++S +L G + +
Sbjct: 29  SRTLRTSAGPPVASSSLFRMLATTNVSTDVASMMLDGTVKI 69


>At5g23890.1 68418.m02806 expressed protein weak similarity to
           SP|P12957 Caldesmon (CDM) {Gallus gallus}
          Length = 946

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 8   LNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGD 139
           ++SLT    S+ QSS+ + SDE K  N + +N +  +  I   D
Sbjct: 125 MHSLTSQQESMIQSSDEISSDEIKVANSEESNLKDEDKSIESND 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,856,248
Number of Sequences: 28952
Number of extensions: 334926
Number of successful extensions: 970
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)