Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120191.Seq
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    39   7e-04
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.8  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   8.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   8.7  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +1

Query: 511 IFIHIIPQGTPYILIPFXXXXXXXXXXXRPGTLAVRLTANLIAGHLLITLL 663
           +F   +P GTP  LIP            R  +L +RL AN+IAGHL +++L
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSIL 199


>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 262 SIWINQNLYGINNNPKIV 209
           ++WIN  +YG+N   K+V
Sbjct: 134 AMWINDKIYGVNTKEKLV 151


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 507 IHIYSYNSTRNTLYFNTIYSNY 572
           I+IYSYN  R+ L  N +   Y
Sbjct: 528 IYIYSYNGERDELVLNNLRPRY 549


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 176 C*WIKNRK*VCY-HFQLKVNFFFWLNLLIRCIFFS 75
           C + KN+  +C  +FQ  +  F W++++ R + FS
Sbjct: 370 CPYGKNKTLICLLNFQSSLLSFEWISIISRALLFS 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,164
Number of Sequences: 5004
Number of extensions: 30935
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)