Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120191.Seq
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to A...    38   0.005
At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con...    28   7.6  
At5g18220.1 68418.m02138 glycosyl hydrolase family 17 protein si...    28   7.6  
At5g49810.1 68418.m06169 methionine S-methyltransferase identica...    27   10.0 
At5g12080.2 68418.m01415 mechanosensitive ion channel domain-con...    27   10.0 
At5g12080.1 68418.m01414 mechanosensitive ion channel domain-con...    27   10.0 

>At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to
           ATPase subunit 6 GI:515963 from [Raphanus sativus];
           contains Pfam profile: PF00119 ATP synthase, A subunit
          Length = 385

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 508 YIFIHIIPQGTPYILIPFXXXXXXXXXXXRPGTLAVRLTANLIAGHLLITLL 663
           + F  ++P G P  L PF           R  +L +RL AN++AGH L+ +L
Sbjct: 275 HFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKIL 326


>At5g19520.1 68418.m02325 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 742

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 546 IGCSLWNYMNKYVFVFLIHPYNI 478
           IG +  N    ++FVF++HPY++
Sbjct: 563 IGSTCKNIFESFMFVFVMHPYDV 585


>At5g18220.1 68418.m02138 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 488

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 277 SYNKMSIWINQNLYGINNNPKIVLIQFIGK--FIKFVDGSKIENKFVIIFN 131
           SYN+   W+ +N+   N++ KI  +  +G   F+   +GS I   +  +FN
Sbjct: 93  SYNRAKDWVRRNITRFNDDVKIKYVA-VGNEPFLTAYNGSFINLTYPALFN 142


>At5g49810.1 68418.m06169 methionine S-methyltransferase identical
           to methionine S-methyltransferase [Arabidopsis thaliana]
           GI:5733429
          Length = 1071

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 256 WINQNLYGINNNPKIVLIQFIGKFIKFVD 170
           W+   +YG++ NP+ V I +I  ++  +D
Sbjct: 136 WLPSKVYGLDINPRAVKISWINLYLNALD 164


>At5g12080.2 68418.m01415 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 734

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 546 IGCSLWNYMNKYVFVFLIHPYNI 478
           IG +  N     VFVF++HPY++
Sbjct: 555 IGSTCKNLFESIVFVFVMHPYDV 577


>At5g12080.1 68418.m01414 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 734

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 546 IGCSLWNYMNKYVFVFLIHPYNI 478
           IG +  N     VFVF++HPY++
Sbjct: 555 IGSTCKNLFESIVFVFVMHPYDV 577


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,886,440
Number of Sequences: 28952
Number of extensions: 135811
Number of successful extensions: 259
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)