Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120189.Seq
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    29   0.68 
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    29   0.90 
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   4.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   6.4  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    26   6.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   6.4  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   8.4  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  

>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = +1

Query: 37  ILWNYCLFIQRGVVVA-----GTHKMAVGTCTKWR 126
           I+  Y LFI  G+ +A     GTHK + GT  +WR
Sbjct: 115 IVTTYQLFITLGIFIAACINMGTHKYSHGTTAQWR 149


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 188 ILGVKLADQSLLQILYSSNHLRHF--VHVPTAILCVPATTTPRWINKQ*FQRMRKYLRTY 15
           I+G ++     +QI+   + L H      P  I+C PAT   +W+N+  F      LR  
Sbjct: 299 IIGDEMGLGKTIQIVSFLSSLHHSGKFQKPALIVC-PATLMKQWVNE--FHTWWAPLRVV 355

Query: 14  VLHA 3
           VLHA
Sbjct: 356 VLHA 359


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 132 PSSPFCA---RTDRHFVRSRHNDSALDKQT 52
           PS  FCA   RTD    RS H ++ ++K+T
Sbjct: 751 PSFIFCAGDDRTDEDMFRSLHKNTRINKET 780


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 374  IFKLLLCTIGMDCHILTVMYY*MNGHNELN 463
            +F ++L  +G   H++TV YY  NG+ +L+
Sbjct: 1370 LFMVVLINLGAIYHVVTVCYY--NGNQKLS 1397


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 393 HSKSLKIGLKTKTILNRRQKL 331
           H + +KIGLK K I+N  +KL
Sbjct: 354 HEERVKIGLKCKHIINYMRKL 374


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 662 FTQYIILISITPLRIKLFVKHIKTW 588
           FT Y+++ S   +RI  F    K W
Sbjct: 565 FTSYVLIYSFASIRISSFYSPAKVW 589


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 2   MHVIHM-YVSI-FAFSGTIVCLSNAESLWRERTKWRSVRAQNGE 127
           MH  ++ +V++ +  S  I+  S  ESL R  T+W S  A+NGE
Sbjct: 495 MHNFNLEFVTLSYLHSKGIITTSQLESL-RNNTEWISSVAENGE 537


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 571 NYHLLVHVLICLTNNFILSGVILINIMYCVKKHFFFFSIIN 693
           ++HL+  +   L  + I+    L +I + +  HF FFS ++
Sbjct: 148 HFHLIPFINFFLLYHQIILSHSLFHISHLISFHFLFFSFLS 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,979
Number of Sequences: 5004
Number of extensions: 51196
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)